PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_5BL_FCF62F21B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | DBB | ||||||||
Protein Properties | Length: 211aa MW: 23088.7 Da PI: 6.3019 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.6e-07 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e+ + lfC ++ lC+ C ++ H Traes_5BL_FCF62F21B.1 3 TICDVCESAVAVLFCAADEAALCRPCDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 25.2 | 3.4e-08 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + +C+ +e+ ++ ++C +++ lC +C ++ H g H Traes_5BL_FCF62F21B.1 52 KLVRCDICESSPAFFYCDIDGTSLCLSCDMAVHVGgkrtH 91 6789****************************96655556 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 7.1E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.04 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.14E-7 | 3 | 45 | No hit | No description |
Pfam | PF00643 | 2.9E-5 | 3 | 41 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-10 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.641 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.1E-6 | 52 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.45E-6 | 54 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MRTICDVCES AVAVLFCAAD EAALCRPCDE KVHMCNKLAS RHVRVGLADP NKLVRCDICE 60 SSPAFFYCDI DGTSLCLSCD MAVHVGGKRT HGRYLLLRQR VEFPGDKPGH MDDVAMQQME 120 SENPRDQNNA HSVAKEQMVN HHHNAYDPAS DGNCNGQGAI DSKMFDLNMR PARNNGQGSS 180 SQTHGVDHSH NNNHDSSGVV PTCNYDGATD K |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK374133 | 0.0 | AK374133.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3055F19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148445.1 | 1e-154 | B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 1e-73 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A3B6LPJ3 | 1e-156 | A0A3B6LPJ3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UGZ8 | 1e-156 | A0A446UGZ8_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_FCF62F21B.1 | 1e-156 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10334 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38960.1 | 6e-76 | DBB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|