PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5BL_B9DD3E76F.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 371aa MW: 39922.8 Da PI: 7.0945

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5BL_B9DD3E76F.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	192	250	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++itY+ eHnh+ Traes_5BL_B9DD3E76F.1 192 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERSRSDPNMLVITYTAEHNHP 250 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.315	186	252	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.2E-30	189	252	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	190	252	IPR003657	WRKY domain
SMART	SM00774	8.6E-38	191	251	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	193	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MDMEEQANAA ATAAREGDLA DVVARANSMP YSAGARRQAP PPPPPSAAAR VMIPYEEERQ 60 RRPANVACGG GGGQVTFEAP PSTVVVDPYL LAAAGGYGLP QQQQHQHQQL LAFQISEHAC 120 CAAADSDDPM RISPPPPPPP PAPHHQMITS YCGMACTHIP YCRKNDVRKV VCIPAPPVMS 180 NRAGGGGEVI PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE RSRSDPNMLV 240 ITYTAEHNHP WPMQRNVLAG YARAHTHAAA KKQQKISSSS SADNAASSSS SNSFHVEQIN 300 PICGDQLPVS CKMPDSTATA GDGGGLLFEG IQPDEVFAEL EELETDNNPM MTSANVYGSR 360 GVSSNYEWHK F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MDMEEQANAA ATAAREGDLA DVVARANSMP YSAGARRQAP PPPPPSAAAR VMIPYEEERQ  60
RRPANVACGG GGGQVTFEAP PSTVVVDPYL LAAAGGYGLP QQQQHQHQQL LAFQISEHAC  120
CAAADSDDPM RISPPPPPPP PAPHHQMITS YCGMACTHIP YCRKNDVRKV VCIPAPPVMS  180
NRAGGGGEVI PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCLARKQVE RSRSDPNMLV  240
ITYTAEHNHP WPMQRNVLAG YARAHTHAAA KKQQKISSSS SADNAASSSS SNSFHVEQIN  300
PICGDQLPVS CKMPDSTATA GDGGGLLFEG IQPDEVFAEL EELETDNNPM MTSANVYGSR  360
GVSSNYEWHK F

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-23	164	252	2	79	Disease resistance protein RRS1
5w3x_D	8e-23	164	252	2	79	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177194.1	0.0	probable WRKY transcription factor 14
Swissprot	Q9SA80	2e-54	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	A0A3B6LYV6	0.0	A0A3B6LYV6_WHEAT; Uncharacterized protein
TrEMBL	A0A446UYF3	0.0	A0A446UYF3_TRITD; Uncharacterized protein
STRING	Traes_5BL_B9DD3E76F.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13466	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-53	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]