PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_B53DA57D4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 390aa    MW: 40881.1 Da    PI: 8.3923
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_B53DA57D4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.61.7e-293993457
            ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                            +YkeClkNhAa++G+havDGCgE+mp  + + +++a+ kCaACgCHRnFHR  +
  Traes_5BL_B53DA57D4.2 39 PTYKECLKNHAAAIGAHAVDGCGEWMPVVELNtADPASYKCAACGCHRNFHRLVM 93
                           58*************************98888799*****************766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-174090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-264090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.2E-244091IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.0624192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.91E-16225292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-28226293IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-23234290IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEAMDVKYRP ALYPNGSVKK LRQAAPVPPP PPAAVEAVPT YKECLKNHAA AIGAHAVDGC  60
GEWMPVVELN TADPASYKCA ACGCHRNFHR LVMVEGSPPP PPPPPPALLP APPMPMPMPM  120
PATVLHGLPQ RGHGQETPDD RLPGVDGDDS DSDSDGSEYD DERSVSPPQH PPPAHLPAPV  180
AQQPPPPYIS SAPHPHMLLS LNSSAPGAPQ GQSRLPAQLS PATAPPPHGM MPARKRFRTK  240
FTAEQKQRMQ ELSERLGWRL QKRDEGVVDE WCRDIGVSKG VFKVWMHNNK HNYLGGHSAR  300
RSASAAASSA ATTPTAPAAG GPFRLSPATG APAPAPFNPS VSHSSPAPTT TGFNMNGTAS  360
SASTATTTAT PSPIFAAGHK LNGASSPQSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-212342921775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6973620.0KF697362.1 Triticum aestivum cultivar Jubeiha zinc-finger homeodomain 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146651.11e-180zinc-finger homeodomain protein 9-like
SwissprotQ6ER214e-79ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A3B6LMR70.0A0A3B6LMR7_WHEAT; Uncharacterized protein
TrEMBLA0A446UB330.0A0A446UB33_TRITD; Uncharacterized protein
STRINGTraes_5BL_B53DA57D4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-25homeobox protein 34
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]