PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_4A3874701.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 355aa MW: 37049.3 Da PI: 6.6698 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.7 | 4e-18 | 172 | 226 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Traes_5BL_4A3874701.1 172 RKKLRLSKEQAAFLEESFKEHSTLNPRQKVALAKQLNLRPRQVEVWFQNRRARTK 226 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6.2e-41 | 172 | 262 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr Traes_5BL_4A3874701.1 172 RKKLRLSKEQAAFLEESFKEHSTLNPRQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR 259 69*************************************************************************************9 PP HD-ZIP_I/II 89 eelk 92 +lk Traes_5BL_4A3874701.1 260 -ALK 262 .555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-18 | 155 | 226 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.18E-18 | 160 | 229 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.119 | 168 | 228 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 170 | 232 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.45E-17 | 172 | 229 | No hit | No description |
Pfam | PF00046 | 1.5E-15 | 172 | 226 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 203 | 226 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.3E-10 | 228 | 262 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-24 | 228 | 271 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MELGLSLGEA MADAGRELVL GLGVGPGARR EEEGRRGQDV VAAVDRRGLA LGCGSSPEPT 60 MRLTLLPMVP SLGFPWPSES RHLEASTRGF DVNQAPSSGG SAWGACTAGA AAEEEQEDTA 120 AAARAAVSSS PNDSGGSFPM DFSAQGDRGA SDAAPGAGGS RGSDEDDGGS ARKKLRLSKE 180 QAAFLEESFK EHSTLNPRQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC 240 CETLTEENRR LQKELAELRA LKTVHPFYMH LPATTLSMCP SCERVASNSA PGTAAAPSPA 300 PASAAPAPAS GAGIGAAAAP EQHRPSSFAA LFSSARSFPL ASSQPQAPLP APSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 220 | 228 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036447 | 1e-169 | BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds. | |||
GenBank | KJ726911 | 1e-169 | KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148543.1 | 1e-174 | homeobox-leucine zipper protein HOX11-like | ||||
Swissprot | Q67UE2 | 1e-139 | HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11 | ||||
TrEMBL | A0A3B6LN47 | 0.0 | A0A3B6LN47_WHEAT; Uncharacterized protein | ||||
STRING | Traes_5BL_4A3874701.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-68 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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