PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_5BL_26B26165E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 76aa MW: 8448.43 Da PI: 7.2919 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 65.8 | 1e-20 | 29 | 75 | 1 | 47 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllk 47 +CaaCk+lrr+C ++C+lapyfpa++p+++anvh++FGasnv +ll+ Traes_5BL_26B26165E.1 29 RCAACKYLRRRCGHGCALAPYFPASRPRRYANVHRVFGASNVARLLQ 75 6******************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.549 | 28 | 76 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.4E-20 | 29 | 75 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MSTAGNEVEP EELQEEEEEE EGGGGNPRRC AACKYLRRRC GHGCALAPYF PASRPRRYAN 60 VHRVFGASNV ARLLQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-18 | 23 | 74 | 7 | 56 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-18 | 23 | 74 | 7 | 56 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020179652.1 | 4e-31 | LOB domain-containing protein 24-like | ||||
Swissprot | P59467 | 4e-19 | LBD23_ARATH; LOB domain-containing protein 23 | ||||
Swissprot | P59468 | 3e-19 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
Swissprot | Q9SHE9 | 5e-19 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A3B6LPM6 | 3e-46 | A0A3B6LPM6_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446UF16 | 3e-46 | A0A446UF16_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BL_26B26165E.1 | 5e-48 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19720 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 7e-21 | LOB domain-containing protein 24 |
Publications ? help Back to Top | |||
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