PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_5AL_16AD8DEEC.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 269aa MW: 30854.4 Da PI: 5.8879

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_5AL_16AD8DEEC.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	63	7.3e-20	1	52	42	102
HHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 42 pkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102 p+yFkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+++ll++ikr+k Traes_5AL_16AD8DEEC.1 1 PRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRHLLRNIKRRKP 52 68*********************999.........********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00447	3.3E-16	1	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.3E-19	1	50	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.5E-13	1	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	4.49E-17	1	50	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
PRYFKHGNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ RHLLRNIKRR KPTHGSQNQQ 60 SLGSYLEVGN FGHDVEIDHL KRDRQLLMAE VVKLRQEQQN TRSDLQAMEK RLQGTEQKQQ 120 QMMSFLARVM QNPMFIHHLL SQSEMRKELE DAISNKRRRR IDQGPEAVDS MGTGSTLEQG 180 SQVMFEQQEP VDSLVNGVIS DLESSSVDTK GAEVQQSVAS SRSEQLRGRP SGELNDDFWE 240 DLLHEGGLGE EASNLVVPDD MNLLAEKLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	KRRRRI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269\|PubMed:18064488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358148	0.0	AK358148.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1069P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187328.1	0.0	heat stress transcription factor A-2e-like
Swissprot	Q6F388	1e-140	HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBL	A0A3B6KR94	0.0	A0A3B6KR94_WHEAT; Uncharacterized protein
STRING	Traes_5AL_16AD8DEEC.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	2e-70	heat shock transcription factor A6B

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]