PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_30D830CD9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Trihelix | ||||||||
Protein Properties | Length: 254aa MW: 28347.3 Da PI: 5.9396 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 61.2 | 2.5e-19 | 34 | 116 | 2 | 85 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 Wt e+++Liea+++++e+ + l ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e ++ ++ p + ++ Traes_4DS_30D830CD9.1 34 WTLPETMLLIEAKKRVHEERHPADLGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYEHAGAGGEA-PRPSYWEM 116 *****************************************************************9998854444.45555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.991 | 26 | 90 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 9.7E-6 | 28 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.92E-7 | 29 | 92 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 5.3E-14 | 32 | 116 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDTKGSGAHR EGEETGNSNA GAMTVAREYR RGNWTLPETM LLIEAKKRVH EERHPADLGL 60 ARWRWVEDYC WRAGCRRSQN QCNDRWDNLM RDYKKVRAYE HAGAGGEAPR PSYWEMARAE 120 RKARYLPSNL LREIYEAMGE IVERRMGFSG PGGPFLGAPP PPPMGSTGLV GVPMQASPLA 180 QVQPRPLEDQ EETRGSSESS PERKRLRLSL DGQPGSSTPA SAAGHNDRHQ EPQGDDREIS 240 SDDAEEHEEL SGAI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200121.1 | 0.0 | trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A3B6JCL0 | 0.0 | A0A3B6JCL0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_30D830CD9.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31310.1 | 3e-45 | Trihelix family protein |
Publications ? help Back to Top | |||
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