PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_EE941086E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 384aa    MW: 42915.2 Da    PI: 5.1575
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_EE941086E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1056.1e-33371282102
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++++sw++ gnsfv++d + f++++L+++Fkh+nf+SF+RQLn+YgF+kv+ ++         we++++ F ++
  Traes_4DL_EE941086E.1  37 FLTKVYDMVSDAATDKVMSWTDAGNSFVIWDAHAFERDLLSRHFKHRNFSSFIRQLNTYGFRKVDPDR---------WEWANEGFLRD 115
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkks 102
                            +k+ll+ ikrkk+
  Traes_4DL_EE941086E.1 116 QKHLLKIIKRKKR 128
                            **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3530120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5233126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.72E-3234126IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-163760IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.1E-2937126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-167587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1688100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGSSKGSPPP SAAGPSSAGN APAPVGPVPR PPEVAPFLTK VYDMVSDAAT DKVMSWTDAG  60
NSFVIWDAHA FERDLLSRHF KHRNFSSFIR QLNTYGFRKV DPDRWEWANE GFLRDQKHLL  120
KIIKRKKRPQ EAGRELEKAP VKAAPGTENI EIGRYGGLVK EVETLKRDKA LLMKQLVDLR  180
LYQQSSNLEV QSLIQRLQVM EQNQKQMMAL LAIVVQNPSL LNQLVQQQQQ QRRNNCVYED  240
GNKKRRFPAL EQGPVTDHET SGSGAEIIQY RPPVPETSSQ VIADEAFLSA TAQPISSAAL  300
NMPMDIDTQT TLGNLNTQGS SGDIFADMPA LPDFEDMHLW FSEDGEPTLT IQDYDEFPQS  360
GQDCQMEAQH NYNNPQHADA ITEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-231912610129Heat shock factor protein 1
5d5v_B2e-231912610129Heat shock factor protein 1
5d5v_D2e-231912610129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3629970.0AK362997.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2012C04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148069.10.0heat stress transcription factor A-9-like
RefseqXP_020148070.10.0heat stress transcription factor A-9-like
SwissprotQ10PR41e-166HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBLA0A3B6JN470.0A0A3B6JN47_WHEAT; Uncharacterized protein
TrEMBLA0A453IKQ10.0A0A453IKQ1_AEGTS; Uncharacterized protein
TrEMBLA0A453ILI40.0A0A453ILI4_AEGTS; Uncharacterized protein
STRINGTraes_4DL_EE941086E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114943039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.18e-60heat shock transcription factor A1D
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]