PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_E0847FBC5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 275aa    MW: 28845.3 Da    PI: 7.7693
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_E0847FBC5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.31.1e-284107198
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilk 82 
                            +C++C+vlr++Ca+dC+++p++     p++q++++ +++k++G++ +++ll+a+p++  r+++++sl+yeA+ ra +PvyGa g++++
  Traes_4DL_E0847FBC5.1   4 SCNGCRVLRKGCADDCTIRPCLawirsPDAQANATVFLAKFYGRAGLINLLAAAPDDAhRPALFRSLLYEACGRAANPVYGASGLFST 91 
                            6*************************99**************************87766***************************** PP

                 DUF260  83 lqqqleqlkaelallk 98 
                            ++++ +q++++++l +
  Traes_4DL_E0847FBC5.1  92 GNWEACQAAVQAVLEG 107
                            *********9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2283110IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MRASCNGCRV LRKGCADDCT IRPCLAWIRS PDAQANATVF LAKFYGRAGL INLLAAAPDD  60
AHRPALFRSL LYEACGRAAN PVYGASGLFS TGNWEACQAA VQAVLEGRRI PQVGADQAAP  120
HPGLVAAYGV RYIPKDGIDR ASAALRVSPA GRASFKRAAS SCSAARSKRD GGHEGESDGS  180
HDHVVEDDGK ALADKHKRRE SSSSEAEAGS HVSQAEQSAS ATVPQEAQED GEIGLELTLG  240
FGPATRVMRS PPARFEARTL STESGHIGLL LGLPV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3730511e-91AK373051.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3019B19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199212.10.0LOB domain-containing protein 41-like
TrEMBLA0A3B6JNZ50.0A0A3B6JNZ5_WHEAT; Uncharacterized protein
STRINGTraes_4DL_E0847FBC5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.16e-62LOB domain-containing protein 41
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]