PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_CFA19981D.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Dof | ||||||||
Protein Properties | Length: 439aa MW: 47273.7 Da PI: 7.9681 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.9 | 1.3e-39 | 102 | 161 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ Traes_4DL_CFA19981D.2 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSL 161 7899*****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-32 | 98 | 159 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.7E-32 | 104 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.761 | 106 | 160 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 108 | 144 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 439 aa Download sequence Send to blast |
MGQLRPAAGG GGDCLIKLFG KTIPVPDAGA GANAGDDLQH RGGSTTAELK VQEIAPQDST 60 GSPQQPEVVD VEDPSAAKNS VADQQDEEQG DTANQKEKLK KPDKILPCPR CSSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS LSAASHFLQR IRAALPGDPL 180 CTPVNTNGTV LSFGSDASTL DVSEQMKHIK ELASVTRTEN TDAPSVGSSA EGWAKGEESS 240 QMNSRERVAA DRSANFVQHP CMNGAAMWPF SCAPSPAYFP SNVAIPFYPA AAAAYWGCMV 300 PGAWNTPWQP QPQPQSQCQS NSPPSAASPV STMSSCFQSR KHPRDGDEER DTKGNGKVWV 360 PKTIRIDDVD EVARSSIWSL IGIKGDKVEK DDGKGCKLAR VFDPKDEAKT SSHRGNNSLP 420 FLKGNPAALS RSVNFQERS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252924 | 0.0 | AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166390.1 | 0.0 | cyclic dof factor 1-like | ||||
TrEMBL | A0A3B6JLJ3 | 0.0 | A0A3B6JLJ3_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IV67 | 0.0 | A0A453IV67_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_978C600B5.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_4DL_CFA19981D.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2099 | 37 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 6e-59 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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