PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_6598DAF2E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 264aa MW: 29622.6 Da PI: 10.2556 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.7 | 9.1e-16 | 76 | 135 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g Traes_4DL_6598DAF2E.1 76 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 135 789******************544454478446*************************98 PP | |||||||
2 | AP2 | 47.8 | 3.6e-15 | 180 | 229 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Traes_4DL_6598DAF2E.1 180 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 229 9***************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.75E-17 | 76 | 145 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.52E-20 | 76 | 145 | No hit | No description |
Pfam | PF00847 | 3.9E-12 | 77 | 135 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.9E-16 | 77 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.716 | 77 | 143 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-29 | 77 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 78 | 89 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.11E-23 | 178 | 239 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-18 | 178 | 239 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 179 | 237 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 179 | 237 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-33 | 179 | 243 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-10 | 180 | 229 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-6 | 219 | 239 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MAAAPMYSSA AGFDGSTNMS ISGIKSWLRQ SMYVPERSPA VPPSVHAAPS EPLPPLPAPC 60 VPVPRKLAQT FGQRTSQFRG VTRHRWTGRY EAHLWDNTCR KEGQTRKGRQ VYLGGYDKEE 120 KAARAYDLAA LKYWGPTTHI NFPLSTYEKE LEEMKHMTRQ EFIAHLRRNS SGFSRGASMY 180 RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL SAVTNFDISK 240 YDVKRICASS HLIGGDLACR RSPT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055767 | 0.0 | BT055767.2 Zea mays full-length cDNA clone ZM_BFb0180B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186422.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q1PFE1 | 1e-126 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A453IWT0 | 0.0 | A0A453IWT0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_6598DAF2E.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP797 | 38 | 151 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-121 | AP2 family protein |
Publications ? help Back to Top | |||
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