PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4BS_34AF89ACE.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 37162.9 Da PI: 5.6921 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.1e-12 | 166 | 213 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L +++P + kK++Ka++L A++Y+k Lq Traes_4BS_34AF89ACE.1 166 QDHIMAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 213 6799************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.77 | 163 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-10 | 166 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-17 | 167 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 167 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.33E-14 | 168 | 217 | No hit | No description |
SMART | SM00353 | 4.4E-15 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 343 aa Download sequence Send to blast |
MATQWFSNMV MDEPSFFHQW QSDATLEQYT EQQIAVAFGQ GEMEAAALMQ QQHQYAAAAA 60 GEHRPRKAAK VNTSWDSCVT EQGSPADSSS PTILSFGGHA DAFAKAPQAP SAAAAYYGAA 120 SAAAPVKPKQ EVDAGAVASF QQVKRSYDAM VAEPARAPSR PAAQNQDHIM AERKRREKLS 180 ERFIALSKIV PGLKKMDKAS VLGDAIKYVK TLQEQVKGME EVARRRPVES AVLVKKSQLA 240 ADEDDGSSCD ENFEGADAGL PEIEARMSDR TVLVKIHCEN RRGVLVAALS ELESIDLAIM 300 NTNVLPFTTS SIDITIMATA GEDFSLSVKD IVRKLHQAFK SSP |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 171 | 176 | ERKRRE |
2 | 172 | 177 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK367591 | 0.0 | AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152395.1 | 0.0 | transcription factor bHLH18-like | ||||
TrEMBL | A0A3B6IN75 | 0.0 | A0A3B6IN75_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446RSY3 | 0.0 | A0A446RSY3_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BS_34AF89ACE.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4213 | 35 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-55 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|