PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_34AF89ACE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 343aa    MW: 37162.9 Da    PI: 5.6921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_34AF89ACE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.1e-12166213355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            + h ++Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k Lq
  Traes_4BS_34AF89ACE.1 166 QDHIMAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 213
                            6799************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.77163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-17167221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-17167229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.33E-14168217No hitNo description
SMARTSM003534.4E-15169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDATLEQYT EQQIAVAFGQ GEMEAAALMQ QQHQYAAAAA  60
GEHRPRKAAK VNTSWDSCVT EQGSPADSSS PTILSFGGHA DAFAKAPQAP SAAAAYYGAA  120
SAAAPVKPKQ EVDAGAVASF QQVKRSYDAM VAEPARAPSR PAAQNQDHIM AERKRREKLS  180
ERFIALSKIV PGLKKMDKAS VLGDAIKYVK TLQEQVKGME EVARRRPVES AVLVKKSQLA  240
ADEDDGSSCD ENFEGADAGL PEIEARMSDR TVLVKIHCEN RRGVLVAALS ELESIDLAIM  300
NTNVLPFTTS SIDITIMATA GEDFSLSVKD IVRKLHQAFK SSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRE
2172177RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675910.0AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152395.10.0transcription factor bHLH18-like
TrEMBLA0A3B6IN750.0A0A3B6IN75_WHEAT; Uncharacterized protein
TrEMBLA0A446RSY30.0A0A446RSY3_TRITD; Uncharacterized protein
STRINGTraes_4BS_34AF89ACE.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-55bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]