PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_097D9E8A8.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 436aa MW: 47089.6 Da PI: 8.0765

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_097D9E8A8.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.8	1.3e-39	97	156	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ Traes_4BL_097D9E8A8.1 97 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSI 156 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-32	93	154	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.1E-32	99	155	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	101	155	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	103	139	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence Send to blast
MGQLRAAAGA GGDCLIKLFG KTIPVPDAGA GDDLQHRGST TAEPKVQEIA PQDSMGSPQQ 60 PEVVDVEDPS AAKNSAADQQ DEEQGDTANQ KEKLKKPDKI LPCPRCSSMD TKFCYYNNYN 120 INQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKSKSISAAS HFLQRIRAAL PGDPLCTPVN 180 TNGTVLSFGS NASTLDVSEQ MKHIKELNSV TRTENTDAPS VGSSAEGWAK GEESSQMNSR 240 ERVAAERSAN CAQHPCMNGA AMWPFSCAPS PAYFASNVAI PFYPAAAAAY WGCMVPGAWN 300 TPWQPQPQPQ PQPQCQSSSL PSAASPVSTM SSCFQSRKHP RDGDEERDTK GNGKVWVPKT 360 IRIDDVDEVA RSSIWSLIGI KGDKVEKDDG KGCKLARVFD PKDEAKMSSH RGNNSLPFLK 420 GNPAALSRSV NFQERS

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence Send to blast

MGQLRAAAGA GGDCLIKLFG KTIPVPDAGA GDDLQHRGST TAEPKVQEIA PQDSMGSPQQ  60
PEVVDVEDPS AAKNSAADQQ DEEQGDTANQ KEKLKKPDKI LPCPRCSSMD TKFCYYNNYN  120
INQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKSKSISAAS HFLQRIRAAL PGDPLCTPVN  180
TNGTVLSFGS NASTLDVSEQ MKHIKELNSV TRTENTDAPS VGSSAEGWAK GEESSQMNSR  240
ERVAAERSAN CAQHPCMNGA AMWPFSCAPS PAYFASNVAI PFYPAAAAAY WGCMVPGAWN  300
TPWQPQPQPQ PQPQCQSSSL PSAASPVSTM SSCFQSRKHP RDGDEERDTK GNGKVWVPKT  360
IRIDDVDEVA RSSIWSLIGI KGDKVEKDDG KGCKLARVFD PKDEAKMSSH RGNNSLPFLK  420
GNPAALSRSV NFQERS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252924	0.0	AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166390.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A446SDZ8	0.0	A0A446SDZ8_TRITD; Uncharacterized protein
STRING	Traes_4BL_097D9E8A8.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-60	cycling DOF factor 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]