PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_86FF10C36.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 441aa MW: 47637.1 Da PI: 7.9781

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_86FF10C36.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.9	1.3e-39	102	161	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ Traes_4AS_86FF10C36.1 102 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSL 161 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-32	98	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.761	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MGQLRAAPGG GGDCLIKLFG KTIPVPDAGD KVGAHDLQHR GSSATAEPKV QEIAPQDSTG 60 SPPQQPEVVD VEDPSAAKNS AADQQDEEQG DTANQKEKLK KPDKILPCPR CSSMDTKFCY 120 YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS LSAASHFLQR IRAALPGDPL 180 CTPVNTNGTV LSFGSDASTL DVSEQMKHIK DLSSVTRTEN TDAPSVGSSA EGWAKGEESS 240 QMNPRERVAA DRSANFVQHP CMNGAAMWPF SCAPPPAYFP SNVAIPFYPA AAAAYWGCMV 300 PGAWNTPWQP QPQPQPQSQC QSSSPPSAAS PVSTMSSCFQ SRKHPRDGDE ERDTKGNGKV 360 WVPKTIRIDD VDEVARSSIW SLIGIKGDKE EKDDGKGCKL ARVFDPKDEA KTSSHRGNNS 420 LPFLKGNPAA LSRSVNFHER S

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MGQLRAAPGG GGDCLIKLFG KTIPVPDAGD KVGAHDLQHR GSSATAEPKV QEIAPQDSTG  60
SPPQQPEVVD VEDPSAAKNS AADQQDEEQG DTANQKEKLK KPDKILPCPR CSSMDTKFCY  120
YNNYNINQPR HFCKNCQRYW TAGGAMRNVP VGAGRRKSKS LSAASHFLQR IRAALPGDPL  180
CTPVNTNGTV LSFGSDASTL DVSEQMKHIK DLSSVTRTEN TDAPSVGSSA EGWAKGEESS  240
QMNPRERVAA DRSANFVQHP CMNGAAMWPF SCAPPPAYFP SNVAIPFYPA AAAAYWGCMV  300
PGAWNTPWQP QPQPQPQSQC QSSSPPSAAS PVSTMSSCFQ SRKHPRDGDE ERDTKGNGKV  360
WVPKTIRIDD VDEVARSSIW SLIGIKGDKE EKDDGKGCKL ARVFDPKDEA KTSSHRGNNS  420
LPFLKGNPAA LSRSVNFHER S

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK252924	0.0	AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166390.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A446QKM5	0.0	A0A446QKM5_TRITD; Uncharacterized protein
STRING	Traes_4AS_86FF10C36.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2099	37	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-57	cycling DOF factor 3

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]