PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_200E79902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 441aa MW: 50980.8 Da PI: 8.1432 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 46.9 | 9e-15 | 111 | 190 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 ++Yn Y+ e+GF +r ks+++ +g ++++ Cs+ gk+++ +++ ++rt+C a++++ +++d+ w++ + + HnHe Traes_4AS_200E79902.1 111 DYYNLYSWECGFGIRYGKSRTN-VKGAKSMQELLCSCGGKPKKINSS---------SSRTECPAMIRLLRTEDDGWYICEYRVSHNHE 188 69****************9998.7777999**********9986555.........9******************************9 PP FAR1 89 la 90 + Traes_4AS_200E79902.1 189 ML 190 85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.9E-11 | 111 | 190 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.1E-29 | 312 | 405 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MAVKETRALS TVVEADEVDS SNASTEQHVS TVLDCESGQK SRTPSFIDVE RGNSGWVRRR 60 RHGAMPDERA ASADRISALE LAFRGFAERK GEAVVVPSMG LTFDSLGEAY DYYNLYSWEC 120 GFGIRYGKSR TNVKGAKSMQ ELLCSCGGKP KKINSSSSRT ECPAMIRLLR TEDDGWYICE 180 YRVSHNHEML HTYAQKLHFP SHRHIDKYTR ELVSRLRQNN VNLSKVYSII GTFFGRIENV 240 PFTKRCLRTL CAKLSRDQAD EDVKKTMDYF AELKQYDPEF TYTVRVDSES RVQTLIWTTG 300 KSKLQYHYFG DVITFDTTYR TNLYDMPFGL FVGVNNHFQS VIYAGVLMRD EKVETFNWVF 360 SEFVKLMGGK KTITILTDQA RAMEVAIEEV YPEATHRWCK WHVLKKAKES LGTLYNKRSE 420 FRDEFHKLIQ DMLTVEEFEK Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195272.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A453G3W1 | 0.0 | A0A453G3W1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4AS_200E79902.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_4AS_200E799021.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-50 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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