PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_FC7AEBB05.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 418aa    MW: 45274.6 Da    PI: 6.4979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_FC7AEBB05.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33e-06175197123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C+ Cgk F+r  nL+ H+r H
  Traes_4AL_FC7AEBB05.1 175 HCCKVCGKGFKRDANLRMHMRGH 197
                            569******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-5174198No hitNo description
PROSITE profilePS5015711.531175202IPR007087Zinc finger, C2H2
SMARTSM003550.011175197IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176197IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.3E-5177197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537225258IPR015880Zinc finger, C2H2-like
SMARTSM0035585263285IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MMCSSDHFAS NNHLYLQHNH QRLPGTGVVE ACDLERIRHE QSRHGQEAEE HRSDPSAALT  60
TYLTFLEHKV GQLRGILCSA PRHPQQQRAI VSAELRCIIV QLSSIANDLA SDSGAGAADV  120
APYEPSEERS PSLSDATHDD SDDHAGADDG GEEEGEGPYE VVQIEKEAIL APHAHCCKVC  180
GKGFKRDANL RMHMRGHGDQ YKAPGALARP GSPAPGAGTE RRFFYSCPYA GCKRNREHRD  240
FQPLKTPVCV KNHYRRSHCD KSHVCCRCGV KRFSVLADLR THEKHCGRDR WVCSCGVSFS  300
RKDKLFAHVA IFDGGHTPAL PPSDDEATGH CTAATATATA INSVLVPGSG GLLPTGGEEA  360
VNLMEQSFSG QMLDGLNCSG AKVGIDDVRA KLSSPVGIDF CDFDGFDLLG AVAMDFNF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3667080.0AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188988.10.0zinc finger protein STAR3-like
SwissprotQ943I63e-89STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3B6HZ190.0A0A3B6HZ19_WHEAT; Uncharacterized protein
TrEMBLA0A446REK00.0A0A446REK0_TRITD; Uncharacterized protein
STRINGTraes_4AL_FC7AEBB05.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.31e-80C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]