PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_5E7F93445.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 698aa MW: 77123.6 Da PI: 8.5074

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_5E7F93445.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.8e-11	392	420	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k +rr+++NReAAr+sR+RKka+i++Le Traes_4AL_5E7F93445.2 392 KTTRRLAQNREAARKSRLRKKAYIQQLES 420 789************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-6	388	451	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.071	390	434	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.74E-7	391	433	No hit	No description
Pfam	PF00170	3.2E-8	392	428	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	393	436	No hit	No description
PROSITE pattern	PS00036	0	395	410	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.2E-30	472	546	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
GFLTKALQVK TRPLLYYTTF FLLPLSLSSL PFSLSLFTVQ ERDQNKLKQA RRDKILSTVG 60 LASGTHAPHK AGETECLSVR CIKTRSCRVR EEQEEHRTGE RKKERKKRSS RLLCSAQAGL 120 FCAVKPSALK QGSQERKESL YWEWEVEAAR VSAWRSRMEE ASSSSGHPRH RGPPPHHVLG 180 YGGFHAAMAM PTNSMPPAAF FSEQDGGGGS GGAYFGELEE ALMHQVATLS SSGGRMISHS 240 HSQQQTATAT STDHPHRHHH HHHGHNHAMP FPSTVADTAT AAAAAARPPP TLDIFPSWPL 300 ALHHHHTPKQ EGSNVTADST DSESSSKNNI NMDSSDHHQQ QQQQQQGMVG LVTVAGQFHQ 360 ISQQQHHQHQ QQQKMATSST HSDRTGKALD PKTTRRLAQN REAARKSRLR KKAYIQQLES 420 GKLKLAQLEQ DLQRARSQGL LVGGAPGGNS SPGAAMFDVE YNRWLDDDSR RMIELRGGLH 480 AHLPDGDLRA IIDDTLTHYD ELFRLKSAAA RADVFHLITG MWATPAERCF LWMGGFRPSD 540 LLKTLAPQLD PLTEQQMVGI CSLEQSLQQA EEALTQGLEQ LHQSLAITVA GSGSLSDDTN 600 LGSFMGDMAV ALGKLASLEG FVIQADNLRQ QTLHQMHRIL TVRQAARCFL AIGEYHNRLR 660 ALSSLWASRP REILMTDEGN CGELSIAAHP AESQYSAY

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

GFLTKALQVK TRPLLYYTTF FLLPLSLSSL PFSLSLFTVQ ERDQNKLKQA RRDKILSTVG  60
LASGTHAPHK AGETECLSVR CIKTRSCRVR EEQEEHRTGE RKKERKKRSS RLLCSAQAGL  120
FCAVKPSALK QGSQERKESL YWEWEVEAAR VSAWRSRMEE ASSSSGHPRH RGPPPHHVLG  180
YGGFHAAMAM PTNSMPPAAF FSEQDGGGGS GGAYFGELEE ALMHQVATLS SSGGRMISHS  240
HSQQQTATAT STDHPHRHHH HHHGHNHAMP FPSTVADTAT AAAAAARPPP TLDIFPSWPL  300
ALHHHHTPKQ EGSNVTADST DSESSSKNNI NMDSSDHHQQ QQQQQQGMVG LVTVAGQFHQ  360
ISQQQHHQHQ QQQKMATSST HSDRTGKALD PKTTRRLAQN REAARKSRLR KKAYIQQLES  420
GKLKLAQLEQ DLQRARSQGL LVGGAPGGNS SPGAAMFDVE YNRWLDDDSR RMIELRGGLH  480
AHLPDGDLRA IIDDTLTHYD ELFRLKSAAA RADVFHLITG MWATPAERCF LWMGGFRPSD  540
LLKTLAPQLD PLTEQQMVGI CSLEQSLQQA EEALTQGLEQ LHQSLAITVA GSGSLSDDTN  600
LGSFMGDMAV ALGKLASLEG FVIQADNLRQ QTLHQMHRIL TVRQAARCFL AIGEYHNRLR  660
ALSSLWASRP REILMTDEGN CGELSIAAHP AESQYSAY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370288	0.0	AK370288.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2108D19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020146200.1	0.0	transcription factor TGAL4-like isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A446R1A3	0.0	A0A446R1A3_TRITD; Uncharacterized protein
STRING	Traes_4AL_5E7F93445.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-134	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]