PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3DS_72524290F.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 435aa MW: 47644.9 Da PI: 7.1295

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3DS_72524290F.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.2	3.2e-37	61	120	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +++cprC+s++tkfCy+nny++sqPr+fC++C+ryWt+GG +rnvPvG+grr+nk++s Traes_3DS_72524290F.1 61 DIIVPCPRCNSMETKFCYFNNYNVSQPRHFCRNCQRYWTAGGNIRNVPVGSGRRRNKHAS 120 56789****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-28	57	117	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.267	64	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-31	64	118	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MPCVSNKLLN VEATPFCSKN REQNDQAISK HGVEVRTGFK SEEIKTGSDG SGQDKVLKKP 60 DIIVPCPRCN SMETKFCYFN NYNVSQPRHF CRNCQRYWTA GGNIRNVPVG SGRRRNKHAS 120 HFRHAMMSCD ANIAAPGDVS NEIHHLALPL LPQVLPGPIK ENETVKEFGS QVPVCKPMSS 180 IHNIEEQKDT HLVSLASGDN SEEQSCPSPA TVSGCSENHT PDSAVKKEPS NVLGYYNGIT 240 LPHPHGPALV FPWSPGWNSI AVMAAAQCST EPIQGLENVK HGLPPWAPPL MMAAPGICTP 300 VVSFPMMPPP LWSCIPGWPN GMWSSPCPGS NGPPNKITCS EDNSPTLGKH SREADLQEED 360 RENNVQVPKT LRIDDPAETT KTSVRDTLGI KPDEKGMFEP FQMKVLKNDK TPESPQALQA 420 NPAAFSRSQS FQERT

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MPCVSNKLLN VEATPFCSKN REQNDQAISK HGVEVRTGFK SEEIKTGSDG SGQDKVLKKP  60
DIIVPCPRCN SMETKFCYFN NYNVSQPRHF CRNCQRYWTA GGNIRNVPVG SGRRRNKHAS  120
HFRHAMMSCD ANIAAPGDVS NEIHHLALPL LPQVLPGPIK ENETVKEFGS QVPVCKPMSS  180
IHNIEEQKDT HLVSLASGDN SEEQSCPSPA TVSGCSENHT PDSAVKKEPS NVLGYYNGIT  240
LPHPHGPALV FPWSPGWNSI AVMAAAQCST EPIQGLENVK HGLPPWAPPL MMAAPGICTP  300
VVSFPMMPPP LWSCIPGWPN GMWSSPCPGS NGPPNKITCS EDNSPTLGKH SREADLQEED  360
RENNVQVPKT LRIDDPAETT KTSVRDTLGI KPDEKGMFEP FQMKVLKNDK TPESPQALQA  420
NPAAFSRSQS FQERT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020191388.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A453ER43	0.0	A0A453ER43_AEGTS; Uncharacterized protein
STRING	EMT11673	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	3e-57	cycling DOF factor 3