PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_6B1815F7D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WOX | ||||||||
Protein Properties | Length: 233aa MW: 26383.3 Da PI: 6.7244 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.3 | 2e-21 | 61 | 121 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps++++++++++l +++e++V++WFqNrRa+ k+ Traes_3DL_6B1815F7D.1 61 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 121 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.5 | 1.4e-33 | 60 | 123 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Traes_3DL_6B1815F7D.1 60 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 123 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-17 | 55 | 126 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.819 | 57 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-14 | 59 | 126 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.44E-18 | 60 | 128 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.22E-13 | 61 | 123 | No hit | No description |
Pfam | PF00046 | 3.1E-19 | 61 | 121 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MTDEQMEVLR KQISIYATIC EQLVEMHRAL TAHQDSIAGM RLGNLYCDPL MVHGGHKITA 60 RQRWTPTQMQ LQILESIFDQ GNGTPSKQKI KDITAELSQH GQISETNVYN WFQNRRARSK 120 RKQAASSLPS NTESEAEGDE DSPTDKKPRS DGSQQQGMAA RAHNPERISE MHRHFDAAER 180 EQVRGPMYGS SNDNGLRPSG GLGQMSFYEN VMSNPRIDQF FQYRTGESFD MSG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363822 | 0.0 | AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08. | |||
GenBank | AK365419 | 0.0 | AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06. | |||
GenBank | AK365714 | 0.0 | AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188039.1 | 1e-177 | WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 1e-116 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | M8CAA6 | 1e-176 | M8CAA6_AEGTA; WUSCHEL-related homeobox 8 | ||||
STRING | EMT31234 | 1e-176 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3898 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-59 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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