PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3DL_4544FA87D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 61aa MW: 6628.58 Da PI: 5.7337 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.5 | 4.2e-07 | 1 | 34 | 16 | 54 |
HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +N+++ Lr+++Pk + K++ a+iL A++Y+k+L Traes_3DL_4544FA87D.1 1 LNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 34 69************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-11 | 1 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.0E-4 | 1 | 34 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.3E-11 | 1 | 48 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.297 | 1 | 34 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.18E-7 | 1 | 39 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
LNDRLYMLRS VVPKISKMDR ASILGDAIDY LKELLQRISD LHSELESAPS SAALGGPSTA 60 N |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU562183 | 1e-97 | EU562183.1 Triticum aestivum cultivar Norstar ICE41 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184163.1 | 1e-33 | transcription factor ICE1-like | ||||
Swissprot | Q9LPW3 | 4e-25 | SCRM2_ARATH; Transcription factor SCREAM2 | ||||
TrEMBL | A0A287MET2 | 3e-34 | A0A287MET2_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A287MET9 | 3e-33 | A0A287MET9_HORVV; Uncharacterized protein | ||||
TrEMBL | A0A446P1J9 | 2e-33 | A0A446P1J9_TRITD; Uncharacterized protein | ||||
TrEMBL | Q2VGC1 | 6e-34 | Q2VGC1_HORVV; Inducer of CBF expression 2 (Fragment) | ||||
TrEMBL | Q2VGC2 | 3e-33 | Q2VGC2_HORVV; Inducer of CBF expression 2 (Fragment) | ||||
TrEMBL | Q2VJ11 | 3e-33 | Q2VJ11_HORVV; Inducer of CBF expression 2 (Fragment) | ||||
STRING | MLOC_46407.1 | 4e-34 | (Hordeum vulgare) | ||||
STRING | Traes_3B_541B06BCF.1 | 2e-33 | (Triticum aestivum) | ||||
STRING | Traes_3DL_4544FA87D.1 | 6e-36 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 2e-23 | bHLH family protein |