PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3DL_4544FA87D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 61aa    MW: 6628.58 Da    PI: 5.7337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3DL_4544FA87D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.2e-071341654
                           HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           +N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Traes_3DL_4544FA87D.1  1 LNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 34
                           69************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-11150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-4134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-11148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.297134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.18E-7139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
LNDRLYMLRS VVPKISKMDR ASILGDAIDY LKELLQRISD LHSELESAPS SAALGGPSTA  60
N
Functional Description ? help Back to Top
Source Description
UniProtMediates stomatal differentiation in the epidermis probably by controlling successive roles of SPCH, MUTE, and FAMA (PubMed:18641265). Functions as a dimer with SPCH during stomatal initiation (PubMed:18641265, PubMed:28507175). {ECO:0000269|PubMed:18641265, ECO:0000269|PubMed:28507175}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5621831e-97EU562183.1 Triticum aestivum cultivar Norstar ICE41 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184163.11e-33transcription factor ICE1-like
SwissprotQ9LPW34e-25SCRM2_ARATH; Transcription factor SCREAM2
TrEMBLA0A287MET23e-34A0A287MET2_HORVV; Uncharacterized protein
TrEMBLA0A287MET93e-33A0A287MET9_HORVV; Uncharacterized protein
TrEMBLA0A446P1J92e-33A0A446P1J9_TRITD; Uncharacterized protein
TrEMBLQ2VGC16e-34Q2VGC1_HORVV; Inducer of CBF expression 2 (Fragment)
TrEMBLQ2VGC23e-33Q2VGC2_HORVV; Inducer of CBF expression 2 (Fragment)
TrEMBLQ2VJ113e-33Q2VJ11_HORVV; Inducer of CBF expression 2 (Fragment)
STRINGMLOC_46407.14e-34(Hordeum vulgare)
STRINGTraes_3B_541B06BCF.12e-33(Triticum aestivum)
STRINGTraes_3DL_4544FA87D.16e-36(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-23bHLH family protein
Publications ? help Back to Top
  1. Tarasov VA,Khadeeva NV,Mel'nik VA,Ezhova TA,Shestakov SV
    The Atlg12860 gene of Arabidopsis thaliana determines cathelicidin-like antimicrobial activity.
    Dokl. Biol. Sci., 2009.
    [PMID:19760875]
  2. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Emmerstorfer A, et al.
    Over-expression of ICE2 stabilizes cytochrome P450 reductase in Saccharomyces cerevisiae and Pichia pastoris.
    Biotechnol J, 2015. 10(4): p. 623-35
    [PMID:25641738]
  6. Lee HG,Seo PJ
    The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.
    Plant J., 2015. 82(6): p. 962-77
    [PMID:25912720]
  7. Raissig MT,Abrash E,Bettadapur A,Vogel JP,Bergmann DC
    Grasses use an alternatively wired bHLH transcription factor network to establish stomatal identity.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(29): p. 8326-31
    [PMID:27382177]
  8. Fu ZW,Wang YL,Lu YT,Yuan TT
    Nitric oxide is involved in stomatal development by modulating the expression of stomatal regulator genes in Arabidopsis.
    Plant Sci., 2016. 252: p. 282-289
    [PMID:27717464]
  9. de Marcos A, et al.
    A Mutation in the bHLH Domain of the SPCH Transcription Factor Uncovers a BR-Dependent Mechanism for Stomatal Development.
    Plant Physiol., 2017. 174(2): p. 823-842
    [PMID:28507175]