PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3B_FA3CD3CB6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 400aa MW: 43310 Da PI: 9.5142

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3B_FA3CD3CB6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	67.7	2.1e-21	115	197	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++d lP + +++i+k++lP + ++++d+++++ ec +efi +++se++d c r+++kti+++ ++ al +lGf++yve++ + Traes_3B_FA3CD3CB6.1 115 KEDVSLPKSTMTKIIKEMLPPDVRVARDTQDLLVECCVEFINLLSSESNDVCSRDDKKTIAPEHVIRALQDLGFKEYVEEVYA 197 67999**************************************************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-36	112	244	IPR009072	Histone-fold
SuperFamily	SSF47113	1.62E-33	116	244	IPR009072	Histone-fold
Pfam	PF00808	5.8E-18	119	183	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MYSKLFHRQK KTVQYMGRGL ATWAGPVGGR SVRVGANLTQ RAPRRPARLT LTLATIPFCN 60 PVVSQGASPK AKPSLPSSAR THRSRRDAPS APQAQAPSRA RRRGMDPMDI VGKSKEDVSL 120 PKSTMTKIIK EMLPPDVRVA RDTQDLLVEC CVEFINLLSS ESNDVCSRDD KKTIAPEHVI 180 RALQDLGFKE YVEEVYAAYE QHKLETLDSP KATKFTGIEM TEEEAVAEQQ RMFAEARARM 240 NNGAAKPKEP ALEPQNQPQQ PPQPQLQLHP QAQQPPQPQS QLHHPQSQQP LHPQLQPYTQ 300 APPQQPLHPQ LQPYTQAPPQ QPLQPPLQLY PQAQPEQPLQ PQSSGSTTGT CVISTAAPST 360 TGTTAAATAA PAIPAISTAA PSATPADASA AAAATSTPAT

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MYSKLFHRQK KTVQYMGRGL ATWAGPVGGR SVRVGANLTQ RAPRRPARLT LTLATIPFCN  60
PVVSQGASPK AKPSLPSSAR THRSRRDAPS APQAQAPSRA RRRGMDPMDI VGKSKEDVSL  120
PKSTMTKIIK EMLPPDVRVA RDTQDLLVEC CVEFINLLSS ESNDVCSRDD KKTIAPEHVI  180
RALQDLGFKE YVEEVYAAYE QHKLETLDSP KATKFTGIEM TEEEAVAEQQ RMFAEARARM  240
NNGAAKPKEP ALEPQNQPQQ PPQPQLQLHP QAQQPPQPQS QLHHPQSQQP LHPQLQPYTQ  300
APPQQPLHPQ LQPYTQAPPQ QPLQPPLQLY PQAQPEQPLQ PQSSGSTTGT CVISTAAPST  360
TGTTAAATAA PAIPAISTAA PSATPADASA AAAATSTPAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	3e-31	114	237	10	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009234	0.0	BT009234.1 Triticum aestivum clone wle1n.pk0106.g11:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235094.1	1e-119	nuclear transcription factor Y subunit beta
TrEMBL	A0A3B6FZ74	0.0	A0A3B6FZ74_WHEAT; Uncharacterized protein
STRING	Traes_3B_FA3CD3CB6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	1e-70	nuclear factor Y, subunit B13