PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AS_6B2E2DE78.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 212aa MW: 22912.9 Da PI: 8.6956 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.3e-09 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 ++tGtCk+G++Ck++H++ Traes_3AS_6B2E2DE78.1 1 MKTGTCKFGSNCKYHHPK 18 89**************96 PP | |||||||
2 | zf-CCCH | 41.3 | 2.6e-13 | 38 | 63 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ Traes_3AS_6B2E2DE78.1 38 GEKECSYYMKTGQCKFGSTCKFHHPE 63 7899********************96 PP | |||||||
3 | zf-CCCH | 29.8 | 1e-09 | 191 | 212 | 1 | 22 |
--S---SGGGGTS--TTTTT-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCk 22 +++++C++++rtG Ck+G++Ck Traes_3AS_6B2E2DE78.1 191 PGQPECQYYMRTGDCKFGATCK 212 5789*****************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 21 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-6 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.014 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-11 | 38 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 39 | 63 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 42 | 62 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2 | 190 | 212 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.958 | 190 | 212 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.1E-7 | 192 | 212 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKTGTCKFGS NCKYHHPKQD GSVQPVMLNS NGFPLRPGEK ECSYYMKTGQ CKFGSTCKFH 60 HPEFGGVPVT PGIYPPLQSS TVPSPHPYAP LTNWQMGRPP VVPGSYMPGS YTPMMLSSGM 120 IPLQGWSPYP ASVNPVASGG VQQTVQAGPM YGIGHHGSSS TIAYGGPYMP YSSSTIQSSN 180 NQQEHGFPER PGQPECQYYM RTGDCKFGAT CK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371626 | 0.0 | AK371626.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2138L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200471.1 | 1e-150 | zinc finger CCCH domain-containing protein 6-like isoform X1 | ||||
Refseq | XP_020200472.1 | 1e-150 | zinc finger CCCH domain-containing protein 6-like isoform X2 | ||||
Swissprot | Q5NAW2 | 1e-136 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A446NCV4 | 1e-152 | A0A446NCV4_TRITD; Uncharacterized protein | ||||
STRING | Traes_3AS_6B2E2DE78.1 | 1e-153 | (Triticum aestivum) | ||||
STRING | Traes_3DS_162123F0C.2 | 1e-152 | (Triticum aestivum) | ||||
STRING | TRIUR3_35231-P1 | 1e-151 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18550.1 | 8e-61 | C3H family protein |
Publications ? help Back to Top | |||
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