PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_3AL_EF72B5A0D.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YB

Protein Properties

Length: 99aa MW: 10908.2 Da PI: 6.7899

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_3AL_EF72B5A0D.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	80.3	2.5e-25	1	47	51	97
NF-YB 51 sdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 sdkcq+ekrktingddllwa+atlGfe+yv+plk+yl+kyr++eg++ Traes_3AL_EF72B5A0D.1 1 SDKCQKEKRKTINGDDLLWAMATLGFEEYVDPLKIYLQKYRDMEGDS 47 89*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.6E-21	1	57	IPR009072	Histone-fold
SuperFamily	SSF47113	3.59E-16	2	54	IPR009072	Histone-fold
PRINTS	PR00615	5.7E-12	4	22	No hit	No description
PRINTS	PR00615	5.7E-12	23	41	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
SDKCQKEKRK TINGDDLLWA MATLGFEEYV DPLKIYLQKY RDMEGDSKLT SKSGEGSVKK 60 DIIGAHSGAT SSNAQAMVQH GGYAQGMGYM QPQYHNGDT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-17	1	42	52	93	NF-YB
4awl_B	2e-17	1	42	53	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-17	1	42	53	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU902788	1e-167	GU902788.1 Triticum monococcum nuclear transcription factor Y subunit B4 mRNA, partial cds.
GenBank	KJ862215	1e-167	KJ862215.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit B4 mRNA, complete cds.
GenBank	KM078741	1e-167	KM078741.1 Triticum aestivum CCAAT-binding transcription factor A (NFYB-D4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182576.1	3e-68	nuclear transcription factor Y subunit B-2-like
Refseq	XP_020182577.1	3e-68	nuclear transcription factor Y subunit B-2-like
Swissprot	P25209	5e-53	NFYB_MAIZE; Nuclear transcription factor Y subunit B
TrEMBL	G0TEQ6	4e-68	G0TEQ6_TRIMO; Nuclear transcription factor Y subunit B4 (Fragment)
STRING	Traes_3AL_EF72B5A0D.1	2e-68	(Triticum aestivum)
STRING	Traes_3B_924B78EE5.1	2e-68	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP201	38	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	5e-33	nuclear factor Y, subunit B10

Publications ? help Back to Top
Li XY, et al. Evolutionary variation of the CCAAT-binding transcription factor NF-Y. Nucleic Acids Res., 1992. 20(5): p. 1087-91 [PMID:1549471]