PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_1B73D2C12.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 79aa MW: 9097.21 Da PI: 8.4581 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.9 | 6.3e-16 | 13 | 52 | 20 | 59 |
S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 + r+YYrC+++gC+vkk+ver+++d ++v+++Yeg Hnh Traes_3AL_1B73D2C12.1 13 HCRNYYRCSTEGCSVKKRVERDKDDANYVVTMYEGVHNHA 52 57*************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 7.19E-14 | 12 | 54 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-7 | 13 | 53 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-11 | 13 | 51 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.3E-15 | 13 | 54 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.109 | 15 | 54 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
PKILFNLNFI YYHCRNYYRC STEGCSVKKR VERDKDDANY VVTMYEGVHN HASPGTIYYA 60 AQDPASGRFF VTGTHQLAP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-112 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195304.1 | 4e-39 | probable WRKY transcription factor 59 isoform X1 | ||||
Refseq | XP_020195305.1 | 5e-39 | probable WRKY transcription factor 57 isoform X2 | ||||
Swissprot | Q93WU9 | 1e-18 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | M7Y8I1 | 9e-42 | M7Y8I1_TRIUA; Putative WRKY transcription factor 51 | ||||
STRING | Traes_3AL_1B73D2C12.1 | 4e-54 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 5e-21 | WRKY DNA-binding protein 51 |
Publications ? help Back to Top | |||
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