PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_BB641EB7A.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CPP

Protein Properties

Length: 397aa MW: 44023.2 Da PI: 8.8349

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_BB641EB7A.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.2	1e-15	45	85	1	41
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 k++kgC+Ck+s+Clk+YCeCf ++ Cse+CkC dCkN e+ Traes_2DS_BB641EB7A.2 45 KHMKGCHCKRSECLKRYCECFRSNILCSENCKCMDCKNYES 85 589***********************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51634	17.919	1	85	IPR005172	CRC domain
SMART	SM01114	5.6E-17	45	86	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.4E-12	48	83	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MSQLLYERQA KFRVVFQYVC LTMSCMKSIP FTSQFKVAEG PLVGKHMKGC HCKRSECLKR 60 YCECFRSNIL CSENCKCMDC KNYESNEDRK AIRRITRHQQ HLVYAHHMQN PAAMGITGPY 120 AALSPAAEKL SNLAVASSGR DQLISNNDSS QVTSSLLTPV PREGTKSAVK VEPHGVTYRP 180 LLADVVQIEN VNELCKVLLL VSRQAAGASI GVKENTNGRK LDRADSCLSS INHETEAVEK 240 QRDEQACSTE NSLTAVPVSE VRSGTPRSDP SDTWKYGRRP VSPETQKLMC NEQDRLFLTP 300 SVAAVIPSAT KQRLPDTYKE QEKRILKTLH DYLGELVNCG RLHEEKISSM SSKFFHERTS 360 VGSSCGSSIS RVAEVARVGQ TIRQALHSPA SVKSPGL

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MSQLLYERQA KFRVVFQYVC LTMSCMKSIP FTSQFKVAEG PLVGKHMKGC HCKRSECLKR  60
YCECFRSNIL CSENCKCMDC KNYESNEDRK AIRRITRHQQ HLVYAHHMQN PAAMGITGPY  120
AALSPAAEKL SNLAVASSGR DQLISNNDSS QVTSSLLTPV PREGTKSAVK VEPHGVTYRP  180
LLADVVQIEN VNELCKVLLL VSRQAAGASI GVKENTNGRK LDRADSCLSS INHETEAVEK  240
QRDEQACSTE NSLTAVPVSE VRSGTPRSDP SDTWKYGRRP VSPETQKLMC NEQDRLFLTP  300
SVAAVIPSAT KQRLPDTYKE QEKRILKTLH DYLGELVNCG RLHEEKISSM SSKFFHERTS  360
VGSSCGSSIS RVAEVARVGQ TIRQALHSPA SVKSPGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	1e-11	36	92	74	130	Protein lin-54 homolog
5fd3_B	1e-11	36	92	74	130	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372195	0.0	AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198634.1	0.0	protein tesmin/TSO1-like CXC 5 isoform X1
Refseq	XP_020198635.1	0.0	protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBL	A0A453ASF7	0.0	A0A453ASF7_AEGTS; Uncharacterized protein
STRING	Traes_2DS_BB641EB7A.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13846	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	8e-49	Tesmin/TSO1-like CXC domain-containing protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]