PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_B6872CB84.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 412aa    MW: 45430.9 Da    PI: 4.6088
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_B6872CB84.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.21.5e-34431332101
                            HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
           HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 
                            Fl+k+y++++d+++++++sws+ +nsfvv+d++ fa+ +Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+++ F +g
  Traes_2DS_B6872CB84.1  43 FLTKTYDMVDDPNTDSIMSWSAGNNSFVVWDPHAFATVLLPRQFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 121
                            9****************************************************************999.........*********** PP

                            XXXXXXXXXXXX CS
           HSF_DNA-bind  90 kkellekikrkk 101
                            +++ll++i+r+k
  Traes_2DS_B6872CB84.1 122 QRHLLKNIRRRK 133
                            **********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.9E-6139132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3539132IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.1E-3839132IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.4E-184366IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.4E-3043132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-188193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1894106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDPVPSLVKE EEEEGAHGTG DSPAVGAAPR PMEGLHDAGP PPFLTKTYDM VDDPNTDSIM  60
SWSAGNNSFV VWDPHAFATV LLPRQFKHSN FSSFVRQLNT YGFRKVDPDR WEFANEGFLR  120
GQRHLLKNIR RRKPPAHTAS NQQSLGSYLE VGHFGYDAEI DRLKRDKQLL MAEVVKLRQE  180
QQNTKARLKA MEDRLCGTEQ KQQQMTSFMA RILRNPEFLK QLIAKNGMRK ELHDAISKKR  240
RRRIDGGPEA YAMGASSSSL DQELPVVFDS HGSVELLAEG SVPVELLSDG IPPDLEGSVD  300
LLGDEIPPGL EGSVALLADG LEGSVELLVD GIPSDLDAGI DSNGVTEPQD YGLGTCEAQQ  360
NRAPGLFHDN FWEELLNKGL SVENDEPVNV DGMDVLSEKM GYLIPNSPTL ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-253813212120Heat shock factor protein 1
5d5u_B1e-253813221129Heat shock factor protein 1
5d5v_B1e-253813221129Heat shock factor protein 1
5d5v_D1e-253813221129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237242KKRRRR
2238243KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085440.0KF208544.1 Triticum aestivum heat shock factor A2b (HsfA2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146162.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB21e-177HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLW5C7X20.0W5C7X2_WHEAT; Uncharacterized protein
STRINGTraes_2DS_B6872CB84.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-101heat shock transcription factor A6B
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]