PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_B1C947D2B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 851aa MW: 94256.9 Da PI: 6.5189 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.2e-19 | 264 | 363 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+kvl+ sd+++ grlvlpk +ae++ ++++e++ lt++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ Traes_2DS_B1C947D2B.1 264 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDAKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSR 350 99**************************555567778***************9989999999***9.********************8 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++ +++lv+++++ Traes_2DS_B1C947D2B.1 351 IE-PGGKLVMGFRK 363 87.77777877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-31 | 256 | 373 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.62E-21 | 261 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.47E-24 | 262 | 363 | No hit | No description |
Pfam | PF02362 | 3.9E-16 | 264 | 363 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-22 | 264 | 364 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.547 | 264 | 365 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.643 | 525 | 575 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.6E-11 | 530 | 572 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MKNPGPQPVP CQVAPKLFLP PQNNQRLFGK SDEFLPGRPL ESPSLMLDSR NDDIAIIAKS 60 NHPFMVKNLE IGQSSNILRQ KEIENGARQI KWEQPTLSIG DMGRMPFLIR PQSALESPQS 120 QCTRRDDNRD PTADSTTSES ISEAGLSMSL GIANNGNKME ATSTMERPMV SPTTPFSEGR 180 ELATTLSPFQ HAQRARHFLT RPPRVAEGAA FDPMRDGFPH LRVARPPAEG RGRNQLLPRY 240 WPRITDQELQ QISGDSNSTI VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQPEGRP 300 LTIQDAKGKE WHFQFRFWPN NNSRMYVLEG VTPCIQSLQL QAGDTVTFSR IEPGGKLVMG 360 FRKATNTVSL PDSQISAIAT GSLLGDSFFS NTNENLSIVS GYSGFLQSMK GAADLQPSSL 420 FDHHANSADG DVSWLKADRF GGRPDEGSFQ FLHKRSRNIG SKSRRLLMDN EEALELKLSW 480 EEAQELLRPA PSAKPTIVMI EDYEFEEYDE PPVFAKRSIF TSRSTGEQDQ WIQCDDCSKW 540 RRVPLNVIIA SKWRCADNTW DPKSCSCSAP EELAHKELQS ILQQYEEIRR RKSNYFLKQS 600 IPEMDASSLD ALATAAVFGE VGNQGAASVA TTTKHPRHRP GCTCIVCIQP PSGKGPKHNP 660 ACTCNVCMTV RRRFKTLMMR KKQRQSEREE AEASKRIAWV GRDEPEGSNL SRSPRTVDTT 720 RDCDVIMFDK ADANKGHIDL NFHPASREEE QQHGGQPRVS MVSLLEVANR PLESYMKQNG 780 LVSLAAEQGS SSGTATVPSQ PAPMESEERP SDEGRAVAVE QEREPVDNMA VDEAAGENQG 840 HAASASDIAA A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-67 | 242 | 366 | 2 | 126 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 670 | 681 | RRRFKTLMMRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK358679 | 0.0 | AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158213.1 | 0.0 | B3 domain-containing protein Os07g0679700 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A453ANZ3 | 0.0 | A0A453ANZ3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_B1C947D2B.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6519 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-178 | HSI2-like 1 |
Publications ? help Back to Top | |||
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