PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_0F2500A60.1 | ||||||||
Common Name | WRKY72-b | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 191aa MW: 21078.9 Da PI: 9.3424 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.6 | 2.6e-33 | 98 | 156 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ Traes_2DS_0F2500A60.1 98 LDDGYRWRKYGQKAVKNNNFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 156 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-35 | 83 | 156 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-30 | 90 | 157 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.113 | 93 | 158 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 98 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-27 | 99 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
TSNSYHFVAG ASSHDHLHHH GQAAGNNSSG GGGLNQGLFP GAKQEEPSNS KDGGGDDGAG 60 SSSQGVGEAD VVVGRKKGEK RERRPRFAFQ TRSQVDILDD GYRWRKYGQK AVKNNNFPRS 120 YYRCTHQGCN VKKQVQRLSR DEGVVVTTYE GTHTHPIEKS NDNFEHILTQ MQVYSGINNV 180 SQTFGNQHMF Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-27 | 89 | 157 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 2e-27 | 89 | 157 | 8 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF368363 | 0.0 | EF368363.1 Triticum aestivum WRKY transcription factor (WRKY72-b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165705.1 | 1e-141 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A453A8A0 | 1e-140 | A0A453A8A0_AEGTS; Uncharacterized protein | ||||
STRING | EMT21213 | 1e-140 | (Aegilops tauschii) | ||||
STRING | Traes_2DS_0F2500A60.1 | 1e-140 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 4e-56 | WRKY DNA-binding protein 75 |