PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DL_77CD244CE.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 329aa MW: 34641.8 Da PI: 9.9334

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_77CD244CE.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2.1e-39	126	187	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Traes_2DL_77CD244CE.2 126 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 187 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-30	123	184	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	128	184	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	130	184	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	132	168	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MCGSSTTTLQ QHKQSCVFCV WCCTVEILDA PSPHSEPPHL HLSAACSLTT CYLPAGLGLV 60 KPMEEMLMGA PSANQQVQGS NPNPPAQAPS SAPGAGGPMR GGTPAMAVAG SGAGAGSTER 120 RPRPQKEKAI NCPRCNSTNT KFCYYNNYSL QQPRYFCKTC RRYWTEGGSL RNVPVGGGSR 180 KNKRSSSSSA SASASAAAST TASVANSSML GAAPNKNPKL AHEGAAHDLN LAFPHHQGGM 240 QAQAGYMAFP XPEPGEQQHV QPGRRRNGGQ WRPCRWRALR DGAAPEHRLL YAAPDADADA 300 RGVRRRGVLA RGVPRAGATA VAELARLLA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372117	0.0	AK372117.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2146K16.
GenBank	AK375958	0.0	AK375958.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111B19.
GenBank	AM084350	0.0	AM084350.1 Hordeum vulgare subsp. vulgare dof2 gene for dof zinc finger protein 2, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020147699.1	1e-128	dof zinc finger protein DOF4.6-like isoform X2
Refseq	XP_020147700.1	1e-128	dof zinc finger protein DOF4.6-like isoform X2
Swissprot	Q9SXG8	1e-52	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A453CLY3	1e-139	A0A453CLY3_AEGTS; Uncharacterized protein
STRING	Traes_2DL_77CD244CE.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	9e-38	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]