PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 311aa MW: 33845 Da PI: 6.0899

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DL_54D11D5E7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	15	64	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ lv+ +++ Gg+ +W+ ++ g++R++k+c++rw++yl Traes_2DL_54D11D5E7.1 15 KGPWTEEEDKALVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWNNYL 64 79***********************************************7 PP
2	Myb_DNA-binding	53.7	4.8e-17	70	114	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE+ l++ +++ lG++ W+tIa ++ gRt++++k++w+++ Traes_2DL_54D11D5E7.1 70 RGNFSEEEERLIITLHASLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-21	7	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.323	10	64	IPR017930	Myb domain
SuperFamily	SSF46689	2.15E-27	12	111	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-10	14	66	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	15	64	IPR001005	SANT/Myb domain
CDD	cd00167	2.33E-8	17	64	No hit	No description
PROSITE profile	PS51294	26.25	65	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-25	68	119	IPR009057	Homeodomain-like
SMART	SM00717	5.4E-16	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-15	70	114	IPR001005	SANT/Myb domain
CDD	cd00167	4.39E-12	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW 60 NNYLRSDIKR GNFSEEEERL IITLHASLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL 120 RMGVDPVTHQ QLPPDQTNHD VNGAAAALLP EALLWAAAAA SLGGLDTGAL MQAQVLQQLL 180 QAIGSNNSTT GLIANLAAAN TLLNSSSSIV PNQMNYLQTG YLCNTSNFAE QHVVQQQLTN 240 DTSPGTSTFA AAERADQLCN TAASYNVAPA GDWSPAQEFG GLLEPMMELP GLCSLEGDSF 300 WKDILEDSYR L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-27	15	119	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM156904	1e-143	AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBank	BT054398	1e-143	BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBank	HQ858691	1e-143	HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020169245.1	0.0	myb-related protein Zm38-like
TrEMBL	A0A3B6DIE2	0.0	A0A3B6DIE2_WHEAT; Uncharacterized protein
STRING	Traes_2DL_54D11D5E7.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6265	29	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	3e-68	myb domain protein 9

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]