PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_3757D78B3.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 401aa    MW: 44044.5 Da    PI: 6.417
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_3757D78B3.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.81e-27622061128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                            lp+G++F+Pt  el+ e+L+ kv + +    ++ +   i+e+ +i++++P++Lp  +k + ++++fF+k +++y  g+rk+r+     
  Traes_2DL_3757D78B3.1  62 LPAGVKFDPTGLELL-EHLEGKVGRVPshdlIDDFIPtIEEAeGICYTHPKNLP-GTKMDGRNLHFFHKISNAYDVGQRKRRKisnsd 147
                            799************.99*****999975553333334888878**********.4556889********************856666 PP

                    NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                                  + +W++tgk+ke+l+++g  +g kk+Lv+   ++++g+    kt+W+mh+y+l
  Traes_2DL_3757D78B3.1 148 hvvcDVHFRWHKTGKSKEILDNNGVIKGWKKILVLIMRSRKDGVtsrtKTNWTMHQYHL 206
                            665433677***************************655555543444*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-3151225IPR003441NAC domain
PROSITE profilePS5100526.38462225IPR003441NAC domain
PfamPF023657.9E-1163206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
DPTVARVAEL STRSAGRALA FISSLVTTVV AVIRNPTHPP PSHIECPNCK YHIDVLSQWP  60
GLPAGVKFDP TGLELLEHLE GKVGRVPSHD LIDDFIPTIE EAEGICYTHP KNLPGTKMDG  120
RNLHFFHKIS NAYDVGQRKR RKISNSDHVV CDVHFRWHKT GKSKEILDNN GVIKGWKKIL  180
VLIMRSRKDG VTSRTKTNWT MHQYHLGVDQ DEKHGELVVS KVFYQSNKDE QPVMCPVNEE  240
SGPFAREIDP TTPMTYPPQP RPPNSSPSRT KQNQEEHAAL SGPDERPSRG ATPDSVYPEM  300
QPYPLGLDAL QGLPDPRTPP GFSHMASWFA GTSSHSNALE DAPLSGLDER LPHGGTLDAA  360
YPDPEGQALP LDVEALQGFP DLGTPPDIFP VSAPSTAAFS G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187626.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A453C7G10.0A0A453C7G1_AEGTS; Uncharacterized protein
STRINGTraes_2DL_3757D78B3.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.14e-58NAC domain containing protein 99
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]