PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 387aa MW: 43289.7 Da PI: 7.1385

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BS_3B6ABF5E6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.1	6.1e-52	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l+pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk + +++e+ewyf+++rd+ky+++ r+nr+t++g+Wkatg Traes_2BS_3B6ABF5E6.1 13 LMPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKlASTGGETEWYFYCPRDRKYRNSARPNRVTAAGFWKATG 99 689*************************.89***********525556788*************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s+ +++ vglkk+Lvfykgra +g ktdW+mhe+r+ Traes_2BS_3B6ABF5E6.1 100 TDRPIYSSeDTRCVGLKKSLVFYKGRAARGIKTDWMMHEFRF 141 **9866777*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-56	12	173	IPR003441	NAC domain
PROSITE profile	PS51005	56.884	13	173	IPR003441	NAC domain
Pfam	PF02365	3.1E-25	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MESRDDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK 60 LASTGGETEW YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEDT RCVGLKKSLV 120 FYKGRAARGI KTDWMMHEFR FPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ 180 RALSHTWGAP LPGATEQDLF SALQPVQALH FASESSSSSL QVAAALPSNQ FNGNYGFQGQ 240 HQQFLKPSNT REDGSSCKVI SFNCGPSLQV LKGPIVLPFQ TQPPSQKPVH VAPPLFFDTQ 300 SGQPEQITGF ATGSSADVNA DMSCRDQESA TTKHGNTFSM NSEREDVGLG RLNFPFDLGA 360 GSSDDWECNI PWESFLSPTV PAEITQY

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MESRDDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK  60
LASTGGETEW YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEDT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR FPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ  180
RALSHTWGAP LPGATEQDLF SALQPVQALH FASESSSSSL QVAAALPSNQ FNGNYGFQGQ  240
HQQFLKPSNT REDGSSCKVI SFNCGPSLQV LKGPIVLPFQ TQPPSQKPVH VAPPLFFDTQ  300
SGQPEQITGF ATGSSADVNA DMSCRDQESA TTKHGNTFSM NSEREDVGLG RLNFPFDLGA  360
GSSDDWECNI PWESFLSPTV PAEITQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	1	176	3	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190502.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	6e-96	FEZ_ARATH; Protein FEZ
TrEMBL	A0A3B6BYP4	0.0	A0A3B6BYP4_WHEAT; Uncharacterized protein
STRING	Traes_2BS_3B6ABF5E6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-95	NAC family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]