PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2BL_B69300543.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 29003.4 Da PI: 5.0621 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.8 | 1e-19 | 60 | 113 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le++F+ + ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Traes_2BL_B69300543.1 60 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 113 458**************9899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.7 | 4.2e-40 | 58 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL++ ydal+++ e+L++e+ +L Traes_2BL_B69300543.1 58 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRADYDALHSRVESLKQEKLAL 145 69******************999***************************************************************** PP HD-ZIP_I/II 88 reelke 93 +++l+e Traes_2BL_B69300543.1 146 AAQLHE 151 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.17E-18 | 41 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.848 | 54 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-19 | 57 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.11E-18 | 59 | 116 | No hit | No description |
Pfam | PF00046 | 2.9E-17 | 59 | 113 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 60 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.4E-7 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.4E-7 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-14 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MDYHQQHQQQ HQFLMPPPAS LPAQQQQLCA PMMGIDMDMD MDEQLCFMGR GGVGRGAERK 60 RRFTEEQIRS LESMFHAHHA KLEPREKAEL ARELGLQPRQ VAIWFQNKRA RWRSKQLEHD 120 FAALRADYDA LHSRVESLKQ EKLALAAQLH ELSERLRQRD GGSGGAATAT ASSSSCNGGG 180 QELDDDKRNV VAGCVDVEPP ESCVLGGTTC ATPADVSVSV ESECDDHLHY DGAVFPESFC 240 ATPELWEPWP WPPVEWNAV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT224376 | 0.0 | KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200397.1 | 1e-145 | homeobox-leucine zipper protein HOX22-like | ||||
Swissprot | Q01IK0 | 4e-98 | HOX22_ORYSI; Homeobox-leucine zipper protein HOX22 | ||||
Swissprot | Q7XUJ5 | 4e-98 | HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22 | ||||
TrEMBL | A0A3B6CAG0 | 0.0 | A0A3B6CAG0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_B69300543.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 5e-30 | homeobox 7 |
Publications ? help Back to Top | |||
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