PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_94E5996F7.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 134aa MW: 14717.4 Da PI: 10.6027

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_94E5996F7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.7e-14	60	116	6	62
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 + +r++kNRe+A rsR+RK+a+++eLe++v L + N +Lk + + l+ e+a+l+++ Traes_2BL_94E5996F7.1 60 KSIRAMKNRESALRSRARKRAYTQELEKEVRRLVEDNLKLKRQCKLLQSEIAALTAQ 116 679*************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-11	54	119	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	57	113	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.6E-11	60	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-12	60	115	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.1E-14	62	116	No hit	No description
CDD	cd14707	8.62E-18	63	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MSWEEPGSPQ LSLSGFSSLP SISSTAHPPA RLPSLSLSIG NGSADGEDQQ LGVSSDDGHK 60 SIRAMKNRES ALRSRARKRA YTQELEKEVR RLVEDNLKLK RQCKLLQSEI AALTAQQASN 120 KQSSPHRRTS STQF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU307116	0.0	EU307116.1 Triticum aestivum FD-like 15 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174160.1	8e-84	bZIP transcription factor 27-like
TrEMBL	B4Y1F0	2e-91	B4Y1F0_WHEAT; FD-like 15 protein
STRING	Traes_2BL_94E5996F7.1	4e-92	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4017	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	3e-11	bZIP family protein

Publications ? help Back to Top
Li C,Dubcovsky J Wheat FT protein regulates VRN1 transcription through interactions with FDL2. Plant J., 2008. 55(4): p. 543-54 [PMID:18433437] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]