PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_83EDE2CBB.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 500aa    MW: 53617.3 Da    PI: 8.062
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_83EDE2CBB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix552.1e-17114201186
               trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            +Wt+  +  L++a+ ++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  s s+s +p+++q
  Traes_2BL_83EDE2CBB.1 114 EWTDGAISSLLDAYMDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRIAG--SASVSLWPWYKQ 199
                            5*************************************6655344446899***************88888877..578889****** PP

               trihelix  85 le 86 
                            +e
  Traes_2BL_83EDE2CBB.1 200 ME 201
                            *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.0E-20112203No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-69255493IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.13E-50258493IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.329258494IPR015963Uridylate kinase, bacteria
PfamPF006969.7E-16261473IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.37E-110261494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MASCDGDFGL LGDDAHPAPQ PSAQPGPPQQ AQGFCFVEAS AAGSGAGPFA PAREEGNHSS  60
DRGKASHHTK RRRDRPEEFS DGGEYCSYIS GGSGGGRKGR GGGVSSDYRK DREEWTDGAI  120
SSLLDAYMDR FEQLNRGNLR GRDWEDVAAA VTDGQGKSSG GKSVEQCKNK IDNLKKRYKV  180
ECQRIAGSAS VSLWPWYKQM EQIMGNSPSP GTPKPPPATN DEKPRQQQQH SNKRYPSSGT  240
GHATTMVPYS RSTPLSNPKW KRVLLKIGGT ALAGEAPHNV DPKVIMLIAR EVQVACRHGV  300
EVAILMGGRN VFCADSWVAA TGTDRASTHP IGMMAAVMNA VLLQASLEKI GVETRVQTAL  360
MMQEVAEPYI RRRAIRHLEK GRVVIFGGTG AGTGNPLFTT DTAAALRASE INADVVLKGV  420
IGDDEYGCPP RSNGSAPFEH ISFRELAARG TSKMDMTAIT CCEENNIPVV IFNMLEPGNM  480
SRAICGDQVG TLVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A1e-612524931239Uridylate kinase
3ek5_B1e-612524931239Uridylate kinase
3ek5_C1e-612524931239Uridylate kinase
3ek5_D1e-612524931239Uridylate kinase
3ek5_E1e-612524931239Uridylate kinase
3ek5_F1e-612524931239Uridylate kinase
3ek6_A1e-612524931239Uridylate kinase
3ek6_B1e-612524931239Uridylate kinase
3ek6_C1e-612524931239Uridylate kinase
3ek6_D1e-612524931239Uridylate kinase
3ek6_E1e-612524931239Uridylate kinase
3ek6_F1e-612524931239Uridylate kinase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102GGRKGRGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3699350.0AK369935.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159183.10.0uncharacterized protein LOC109744472
TrEMBLA0A3B6C6Z30.0A0A3B6C6Z3_WHEAT; Uncharacterized protein
STRINGTraes_2BL_83EDE2CBB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-150Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]