PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2BL_5CA3D3163.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 252aa MW: 27929.5 Da PI: 10.5847

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2BL_5CA3D3163.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.3e-10	42	100	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r + NR +A rs +RK +i+eLe+kv+ L++e ++L +l l+ + l++e+ Traes_2BL_5CA3D3163.1 42 KRAKRIMANRQSAARSKERKMRYIAELERKVQCLQTEATTLSAQLALLQRDTSGLTNEN 100 9*********************************************9999888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.2E-17	38	102	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.68	40	103	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.0E-9	42	98	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.68E-11	42	97	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.4E-11	42	97	No hit	No description
CDD	cd14703	5.74E-21	43	92	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSMDGSTSFG SASSGMPGRH GADAKKAISD AKLAELALVD PKRAKRIMAN RQSAARSKER 60 KMRYIAELER KVQCLQTEAT TLSAQLALLQ RDTSGLTNEN GDLKLQVQTM EQQVRLQDVL 120 NDRLRDEVQQ LKMATGQLNA NNGNLGNFGG LSSYGVNSQS YQRSQMQQQS LLAAQQLQQL 180 QIHSQHQQPQ MHLQQQRLAS VRQQQQQQQQ QSLLRPEALP FPGDLKMKGI AMTAHVQNAG 240 PSPFDGRARS EP

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK366888	0.0	AK366888.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047M20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150534.1	1e-125	transcription factor RF2a-like
Swissprot	Q04088	5e-63	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A3B6B140	1e-154	A0A3B6B140_WHEAT; Uncharacterized protein
TrEMBL	A0A446L846	1e-154	A0A446L846_TRITD; Uncharacterized protein
STRING	Traes_2BL_5CA3D3163.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12302	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	3e-46	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]