PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2BL_3A840DB921.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 302aa MW: 32976.7 Da PI: 6.2885 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.4 | 2.6e-29 | 4 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a ++ r+ +++sl+yeA+ r+ +P+yG+vg+++ Traes_2BL_3A840DB921.2 4 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGTDDSlRPGIFRSLLYEACGRIVNPIYGSVGLLW 90 6****************************************************977666**************************** PP DUF260 82 klqqqleqlkaelallkee 100 + ++q++q+++e++l +++ Traes_2BL_3A840DB921.2 91 SNNWQMCQAAVEAVLSGKP 109 ************9987765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.445 | 3 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-23 | 4 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCSEDCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLINAGTDD 60 SLRPGIFRSL LYEACGRIVN PIYGSVGLLW SNNWQMCQAA VEAVLSGKPI VQVSSEDAAA 120 DRTPPLKAYD IRHVSTSSAA DGRLHKVAKP GRTRFKRASS ASSHHNPSSD SNNKPKPQPQ 180 PRAPTAEEER DRQHRKEMEE GAFQRAPSHE SSDSRHEDPV EPHCQQEASA DTEAEAGSHV 240 SQAEQEQSTE PAAEHAEEVE KEDEELGLEL TLGFAPVAAR PAGFHLSVRT AAEPAFVGLR 300 FL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK251426 | 0.0 | AK251426.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence. | |||
GenBank | AK361913 | 0.0 | AK361913.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001D20. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020176408.1 | 0.0 | LOB domain-containing protein 40-like | ||||
Swissprot | Q9M886 | 3e-78 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A3B6C629 | 0.0 | A0A3B6C629_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2BL_3A840DB921.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1235 | 37 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02550.1 | 8e-80 | LOB domain-containing protein 41 |
Publications ? help Back to Top | |||
---|---|---|---|
|