PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_C2A4AFE6F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 73aa    MW: 8506.68 Da    PI: 9.6207
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_C2A4AFE6F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1283.5e-40373272
                           -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT----- CS
                    SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhner 72
                           Cq+e+C adlseak+yhrrhkvCe+h+ka+vv+v+gl+qrfCqqCsrfhel efD++krsCrrrLa+hner
  Traes_2AS_C2A4AFE6F.1  3 CQAERCGADLSEAKRYHRRHKVCEAHAKAAVVVVAGLRQRFCQQCSRFHELLEFDDQKRSCRRRLAGHNER 73
                           **********************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114130.641173IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.5E-33164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-36173IPR004333Transcription factor, SBP-box
PfamPF031106.9E-31373IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
PSCQAERCGA DLSEAKRYHR RHKVCEAHAK AAVVVVAGLR QRFCQQCSRF HELLEFDDQK  60
RSCRRRLAGH NER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-343731181squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916726e-78FP091672.1 Phyllostachys edulis cDNA clone: bphylf033o15, full insert sequence.
GenBankFP0944786e-78FP094478.1 Phyllostachys edulis cDNA clone: bphyst005i03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152957.17e-47squamosa promoter-binding-like protein 13
SwissprotQ6Z4611e-36SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLA0A1D5UXY12e-45A0A1D5UXY1_WHEAT; GLW7
TrEMBLA0A3B6AY452e-45A0A3B6AY45_WHEAT; SBP protein
TrEMBLA0A446KWN62e-45A0A446KWN6_TRITD; Uncharacterized protein
TrEMBLA0A453BFK42e-45A0A453BFK4_AEGTS; Uncharacterized protein
STRINGTraes_2BS_186EA570A.18e-46(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.14e-25squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]