PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 239aa MW: 26110.6 Da PI: 9.8854

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2AS_4C9807337.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52	1.6e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++e+de+l + v+q+G g+W++Ia+ g+ R++k+c++rw yl Traes_2AS_4C9807337.1 14 RGLWSPEDDEKLMNHVAQYGYGCWSSIAKIAGLERCGKSCRLRWMHYL 61 788*****************************************9996 PP
2	Myb_DNA-binding	40.6	6e-13	67	109	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++ E++l+++++ G++ W+ Ia+ ++ gRt++++k++w++ Traes_2AS_4C9807337.1 67 GPFSQGEEDLIIHLHSIRGNK-WSQIAAQLP-GRTDNEVKNFWNT 109 799****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.851	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.55E-29	11	107	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-20	12	64	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-14	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	6.52E-11	17	61	No hit	No description
SMART	SM00717	2.0E-11	65	113	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.495	66	115	IPR017930	Myb domain
Pfam	PF00249	8.5E-12	67	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-19	67	112	IPR009057	Homeodomain-like
CDD	cd00167	3.91E-8	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSKRPGATKK RLKRGLWSPE DDEKLMNHVA QYGYGCWSSI AKIAGLERCG KSCRLRWMHY 60 LTPDRGGPFS QGEEDLIIHL HSIRGNKWSQ IAAQLPGRTD NEVKNFWNTI IKKKLRQRRI 120 DPAIHKPLAH AGAAAAATPV TRTAVFSEAE LILSSPVGTQ PMPPLVSAES YVYSRGSMDG 180 AGGAHAALGG CSDDGSLSSL SGYNNNQKAD FPGYLDADAL HGAVIPSVWS SRTLNWWRA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-23	12	115	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353785	0.0	AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23.
GenBank	AK358210	0.0	AK358210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1071D01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020154053.1	1e-117	transcription factor MYB3-like
Swissprot	Q8LPH6	2e-57	MYB86_ARATH; Transcription factor MYB86
TrEMBL	A0A3B6AV62	1e-177	A0A3B6AV62_WHEAT; Uncharacterized protein
STRING	Traes_2AS_4C9807337.1	1e-178	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP60265	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	2e-59	myb domain protein 86

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]