PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AS_20DD727DC.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 336aa    MW: 37100.5 Da    PI: 4.7745
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AS_20DD727DC.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.23.8e-2555120171
                E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            r+++sL+llt+kf++ll+ +e+g+++ln++ + L   +v  ++RRiYDi+NVLe+++liek  kn irwkg
  Traes_2AS_20DD727DC.1  55 RYDSSLGLLTKKFINLLKGAEDGTLDLNKAVEIL---EV--QKRRIYDITNVLEGVDLIEKGLKNTIRWKG 120
                            6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.1E-2752121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.14E-1555118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-3155120IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.4E-2357120IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.02E-31132244No hitNo description
SuperFamilySSF1440743.92E-20134243No hitNo description
PfamPF164211.0E-23136241IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
ETEQKIVIEN AQSEVGKGEI SQGHHKESTT GPAKGIKRAR KPHGSIEGDA ANNCRYDSSL  60
GLLTKKFINL LKGAEDGTLD LNKAVEILEV QKRRIYDITN VLEGVDLIEK GLKNTIRWKG  120
FDMLLPKEVE LQTSALKEEL DSSHEEECRL DEEIREAQEK LLALKLNKDK KKWLYLSKED  180
ISKIPHLQGS TRIAIHAPHG TCVEVPDPNA DMDICKDLES QEKHYQLLLR SSMGPIDCFL  240
ISDHQGVSDP EQVAQDNFDH ASTAGGSGAP RPADDHPSQA PEKGEGDTVG KHTSEPSSTH  300
EPMSGILKIV LPDTDPDADY WLASDVDATM TETWAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-2054121674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147413.10.0transcription factor E2FC-like
TrEMBLA0A3B6APH00.0A0A3B6APH0_WHEAT; Uncharacterized protein
STRINGTraes_2AS_20DD727DC.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.32e-62E2F transcription factor 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]