PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_AB04643C9.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 410aa    MW: 45513.4 Da    PI: 6.078
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_AB04643C9.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.27.5e-28662101128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                            lp+G++F+Pt  el+ e+L+ kv + +    ++ +  +i+e+ +i++++P++Lp  +k + ++ +fF+k +++y  g+rk+r+     
  Traes_2AL_AB04643C9.1  66 LPAGVKFDPTGLELL-EHLEGKVGRAPshnlIDDFIpTIEEAeGICYTHPENLP-GIKMDGRNNHFFHKVSNAYDVGQRKRRKisnsd 151
                            799************.99******99976553333334888878**********.667788999******************856666 PP

                    NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                                  + +W++tgk+k++l+++g  +g kk+Lv+   ++++g     kt+W+mh+y+l
  Traes_2AL_AB04643C9.1 152 hvvcDVHFRWHKTGKSKKILDNNGVIKGWKKILVLMMRSRKDGItsrtKTNWTMHQYHL 210
                            665433677***************************655554433333*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3055229IPR003441NAC domain
PROSITE profilePS5100526.18666229IPR003441NAC domain
PfamPF023653.5E-1167210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
LIQVSVCCRF NGSAIDSTAA RCKLFISSLV TTIVAVIRNP THPPPSQIEC PNCKYHIDLL  60
SQWPGLPAGV KFDPTGLELL EHLEGKVGRA PSHNLIDDFI PTIEEAEGIC YTHPENLPGI  120
KMDGRNNHFF HKVSNAYDVG QRKRRKISNS DHVVCDVHFR WHKTGKSKKI LDNNGVIKGW  180
KKILVLMMRS RKDGITSRTK TNWTMHQYHL GVDQDEKHGE PVVSKVFYQS KKDEQPVMCP  240
VNEESDPFAG EIDTTTPMTY PPLPRPPNSS PSRTEQNQEE HAALSGPDER PSRGATPDSV  300
YPEMQLFPLG LDALQGLPDP RMTPGFSHMA SWFAGTSSYS NALENAPLSG LDECLPHGGT  360
LDAAYPDPEG QALPLDAEAL QGFPDLGMPP NIFPQDLQFR SQDIFWGEGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187626.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A3B6AZR10.0A0A3B6AZR1_WHEAT; Uncharacterized protein
TrEMBLA0A446L6Y60.0A0A446L6Y6_TRITD; Uncharacterized protein
STRINGTraes_2AL_AB04643C9.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.16e-58NAC domain containing protein 99
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]