PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2AL_8EC530273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | E2F/DP | ||||||||
Protein Properties | Length: 458aa MW: 49960.2 Da PI: 5.0025 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 79.6 | 2.9e-25 | 145 | 210 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r e+sL+ lt+kf++ll+++e+gi++ln+va+ L v k+RRiYDi+NVLe+++l+ekk kn+irw+g Traes_2AL_8EC530273.1 145 RAEHSLGELTKKFISLLKQAEDGILDLNHVAEIL---VV--KKRRIYDITNVLEGIGLLEKKLKNRIRWRG 210 6799******************************...88..9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 5.0E-27 | 143 | 212 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.3E-31 | 145 | 210 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.45E-16 | 145 | 208 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.9E-23 | 147 | 210 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.76E-42 | 220 | 326 | No hit | No description |
SuperFamily | SSF144074 | 2.22E-30 | 221 | 326 | No hit | No description |
Pfam | PF16421 | 2.1E-29 | 225 | 324 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence Send to blast |
MSGGGRPQAA QQIVQSVQKC VPLAPERPPF AVPAEYHRFP LPPSSSAPAA ASRGSAGGDV 60 EEGIVIRMPL KRKAPCGESD AIESTEWMIT SPGFTEGVSS PHMTPVSGKA ARTYKSKAKG 120 SKDGLQTPIS NAGSPGTPLT PGSSRAEHSL GELTKKFISL LKQAEDGILD LNHVAEILVV 180 KKRRIYDITN VLEGIGLLEK KLKNRIRWRG LDDSGANLDN EISVLETELE NLKLQEKALD 240 NRISEMHEKV RELTEEENNQ RWLYLTEDDI KGLPCFQNET LIAIKAPHGT TLEVPDPDEA 300 GDYVQRRYTI VIRSTMGSID LYLVSKFEEN MEELVGVTTP PRHANVAEPA STDGFIATEA 360 GQSSRSKDKL PNIQHIHKTP DLNAQNFGGM AKITPEFDVD ADYYLLTDGD ASSITDMWRT 420 APEVQWDQFL AEEATAPRTP QQQPAVVSKS TAVGPTCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 5e-23 | 135 | 211 | 2 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK372442 | 0.0 | AK372442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3002B23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167678.1 | 0.0 | transcription factor E2FA-like isoform X1 | ||||
TrEMBL | A0A3B6AZ49 | 0.0 | A0A3B6AZ49_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446L3U1 | 0.0 | A0A446L3U1_TRITD; Uncharacterized protein | ||||
STRING | Traes_2AL_8EC530273.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-109 | E2F transcription factor 3 |
Publications ? help Back to Top | |||
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