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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Traes_2AL_82C3E7E14.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family |
NAC |
Protein Properties |
Length: 339aa MW: 38687.5 Da PI: 6.9339 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Traes_2AL_82C3E7E14.1 | genome | IWGSC | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 174.9 | 2.3e-54 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWka 85
+ppGfrFhPtdeelv++yL+kkv+ k+++l ++ik+vd+yk+ePwdL++ k+ + ++++w+fFs++dkky+tg+r+nrat++g+Wka
Traes_2AL_82C3E7E14.1 7 VPPGFRFHPTDEELVDYYLRKKVQLKRIDL-DIIKDVDLYKIEPWDLQErcKIGTeDQNDWFFFSHKDKKYPTGTRTNRATTAGFWKA 93
69****************************.99**************953444442455***************************** PP
NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
tg+dk++++ k+ lvg++ktLvfykgrap+g+k dW+mheyrle
Traes_2AL_82C3E7E14.1 94 TGRDKPIYV-KHCLVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 136
*********.899*****************************85 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048759 | Biological Process | xylem vessel member cell differentiation |
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MNAFSHVPPG FRFHPTDEEL VDYYLRKKVQ LKRIDLDIIK DVDLYKIEPW DLQERCKIGT 60 EDQNDWFFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YVKHCLVGMR KTLVFYKGRA 120 PNGQKLDWIM HEYRLETNEN GAPHDEGWVV CKVFKKRVAT VQRMAATDSA FWFNNDHVAF 180 MAPRVDSPRQ AVHHLQNAAY HHGHHQTYHH PCKVELEYHQ LLPQEPASFL QLPQLEMPGL 240 PDLIGAVAAS LQPCNQTHDG QASRQLEIEP VYVTDASAGE WRDLDKFMAS QLSHDGSTPK 300 ESSSYANPAL AFQAEGKHEE ALDYVSASAS SGGDNGLWK
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ693423 | 0.0 | JQ693423.1 Brachypodium distachyon SWN2 (SWN2) mRNA, complete cds. |