PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1DL_AFDF3B024.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 525aa MW: 58056.3 Da PI: 6.3082

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1DL_AFDF3B024.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2.1e-11	215	243	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Traes_1DL_AFDF3B024.1 215 KTERRLAQNREAARKSRLRKKAYVQQLET 243 88*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-6	211	277	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.5E-8	213	257	No hit	No description
PROSITE profile	PS50217	9.22	213	257	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.6E-9	215	243	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.68E-7	215	256	No hit	No description
PROSITE pattern	PS00036	0	218	233	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-27	296	370	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence Send to blast
MSRVLPLIAM LQQGEGESSW GMASDRGRAV PFGQALGYGI QGHAPPPANF LRELQPAAAA 60 YFGELEEALI HGTCAAGVDP VMIESDAHTK SAVAAAAGYL AARPPTLEIF PSWPMSHLQK 120 PYSGNSQSVG STDSSSAQNT MSQAELVSPV SMRTDSGQQQ QDQQEALMVT IDDYNYSQGL 180 GAAPATAPSF QQHAGAQDKR KHGSTRKDGK LVDPKTERRL AQNREAARKS RLRKKAYVQQ 240 LETGRIRLQQ IEQELQRGRS QGLLTGGCSA PGEMSSAAVM FDMEYARWLD EDNKYMAEIQ 300 GALQAQVLDA NLSTIVEDCM RHHDELFHLR AVLARSDVFH LMTGMWATQS ERCFLWMAGF 360 RPSEILKMLI PQLDPSTEQQ LLGMCNLQQS SEQAEEALEQ GLKQLHQSLA DAVGAGPLND 420 GADVANYTGL MALALDRLDN LESFYREADN LRQQTLHHMR RILTTRQTAR CFVSLGEYHR 480 RLRALSSIWA SRPRENFMMP ENVSSTATEF QAIHHQPQQN QFSGL

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence Send to blast

MSRVLPLIAM LQQGEGESSW GMASDRGRAV PFGQALGYGI QGHAPPPANF LRELQPAAAA  60
YFGELEEALI HGTCAAGVDP VMIESDAHTK SAVAAAAGYL AARPPTLEIF PSWPMSHLQK  120
PYSGNSQSVG STDSSSAQNT MSQAELVSPV SMRTDSGQQQ QDQQEALMVT IDDYNYSQGL  180
GAAPATAPSF QQHAGAQDKR KHGSTRKDGK LVDPKTERRL AQNREAARKS RLRKKAYVQQ  240
LETGRIRLQQ IEQELQRGRS QGLLTGGCSA PGEMSSAAVM FDMEYARWLD EDNKYMAEIQ  300
GALQAQVLDA NLSTIVEDCM RHHDELFHLR AVLARSDVFH LMTGMWATQS ERCFLWMAGF  360
RPSEILKMLI PQLDPSTEQQ LLGMCNLQQS SEQAEEALEQ GLKQLHQSLA DAVGAGPLND  420
GADVANYTGL MALALDRLDN LESFYREADN LRQQTLHHMR RILTTRQTAR CFVSLGEYHR  480
RLRALSSIWA SRPRENFMMP ENVSSTATEF QAIHHQPQQN QFSGL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370195	0.0	AK370195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2106J11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176119.1	0.0	transcription factor TGAL5-like isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A3B5ZY87	0.0	A0A3B5ZY87_WHEAT; Uncharacterized protein
STRING	Traes_1DL_AFDF3B024.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-125	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]