 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Traes_1BL_C25B5DDB4.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
| Family |
MYB |
| Protein Properties |
Length: 554aa MW: 61686.2 Da PI: 6.924 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Traes_1BL_C25B5DDB4.2 | genome | IWGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 54.6 | 2.5e-17 | 17 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT+eEde l +av+ + g++Wk++a+ ++ Rt+ qc +rwqk+l
Traes_1BL_C25B5DDB4.2 17 KGGWTPEEDETLREAVTVFKGKNWKRVAEFFP-DRTEVQCLHRWQKVL 63
688*****************************.************986 PP
|
| 2 | Myb_DNA-binding | 56.8 | 5.1e-18 | 69 | 115 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde +++ vk++G+ W+ Iar + gR +kqc++rw+++l
Traes_1BL_C25B5DDB4.2 69 KGPWTQEEDETIIQKVKEHGPTKWSVIARSLH-GRIGKQCRERWHNHL 115
79******************************.*************97 PP
|
| 3 | Myb_DNA-binding | 60.7 | 3.1e-19 | 121 | 163 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
+ +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+
Traes_1BL_C25B5DDB4.2 121 KEAWTLEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 163
579*******************.*********.***********8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 554 aa
Download sequence Send
to blast |
SYSTNIRRTS GPVRRAKGGW TPEEDETLRE AVTVFKGKNW KRVAEFFPDR TEVQCLHRWQ 60
KVLDPELIKG PWTQEEDETI IQKVKEHGPT KWSVIARSLH GRIGKQCRER WHNHLDPQIR 120
KEAWTLEEEQ VLVDAHRMHG NKWAEIAKLL PGRTDNSIKN HWNSSVRKRL DEYDTGAALP 180
VPVHVSHNDL KQVTMAPPAE NYIDLNKEPN ISLSSVIVDH SDPTHSPRVC SLKNIKGCSD 240
FLSLSLPTAQ PVTSCQASVA DDSAVALAIM GMKMNSGRDK DMELNFVCQK GLQINLPNEK 300
GLEINSVTAK PDGEIDNTGR ESTLVKEAQS FGSLCYQIPK LEDIDLVRSP VLSRHHGSEH 360
GVDGFQSPTG YATPSPTDGI QSDQLSVESI LKSAAENFPG TPSILRRRKR DKPTPSQDTD 420
FKIDANSDGF DTPKANCTTY SPHSFKTASF LSLGRLDDQQ LPSVLGKFDV SPTYRLRSKR 480
MAVLKTVEKH LDFSADAMDT CDMVGSLKSS CRNTESVNAS SDISSAQDRR INGHMIGLET 540
LTSDFAHTTQ LDAT
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 405 | 412 | RRRKRDKP |
| 2 | 406 | 411 | RRKRDK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK363512 | 0.0 | AK363512.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016D03. |
