PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1BL_3EEA722DF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 269aa    MW: 28892.2 Da    PI: 4.3545
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1BL_3EEA722DF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00018245266323
                            ETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                            C+ C+k+F++   L +H +  H
  Traes_1BL_3EEA722DF.1 245 CKSCSKTFNSEGALASHSKAkH 266
                            *****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.471243269IPR007087Zinc finger, C2H2
PROSITE patternPS000280245266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MFVKIGDQKL AIGTLSTDKF PQIQFDLVFE KEFELSHNSK TSSVFFSGYK VFQPAEGDEM  60
DFDSEDDSEE EEEKIIPALT KENGKPEAKE QKKQVKIDTA APSKSKAAAK DVGKSKKDDD  120
SDDDDDSDED DSEDDSGDDG ALIPMEDDSD DSEDGDDSSD DSEDSSDEEE EETPKKQETG  180
KKRVAGSVLK TPVTDKKAKI ATPSGQKTGD KKGAVHVATP HPAKKAGKTP ATSEKSPKSG  240
GSVACKSCSK TFNSEGALAS HSKAKHEAK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ6566020.0DQ656602.1 Triticum aestivum histone deacetylase HDAC2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199042.11e-117histone deacetylase HDT2-like
SwissprotQ9M4U51e-71HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLA0A446KF850.0A0A446KF85_TRITD; Uncharacterized protein
STRINGTraes_1BL_3EEA722DF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.14e-19histone deacetylase 2C
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]