PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AS_CD57D000A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 322aa    MW: 35529.6 Da    PI: 7.6606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AS_CD57D000A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.4e-05236258123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ CgksF + s L  H+r H
  Traes_1AS_CD57D000A.1 236 HRCNACGKSFGSGSALGGHMRWH 258
                            79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.39E-6233260No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5234258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-8235259IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.783236263IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MREHREKNVL SKPVEEAAGL MEARAIAGGG CNVLLSPVKR KRSKRGTPPL KFNEMDAAAS  60
LLLLSEHSSK ISAYEDCYTE VMDSLPPNVS KDVKLNAFDH QLVRSAEFKK PKGCKCSAYD  120
ICYGQCVKDN NLIPNVAKEK TSIPNIAKNS ACEDCFGECE KDSSLIPNVE LKERSLIANV  180
PEKDNTLISI VLEEVELNVL DHVLAGDAEL RKKQITDNSV EMKCADFSAA VNVKRHRCNA  240
CGKSFGSGSA LGGHMRWHLP RSNDRHHGFA ESPDSVVMKE QKQKLELGTK FLDLRLPGLT  300
DITIFSGLKS EPEPWRVASS VH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496280.0AK249628.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf40p20, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164841.10.0uncharacterized protein LOC109750291
TrEMBLA0A3B6LFJ00.0A0A3B6LFJ0_WHEAT; Uncharacterized protein
TrEMBLA0A446TXC20.0A0A446TXC2_TRITD; Uncharacterized protein
STRINGTraes_1AS_CD57D000A.10.0(Triticum aestivum)
STRINGTraes_5BS_CD57D000A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91122229
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]