PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 296aa MW: 32569.5 Da PI: 6.1767

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_25726E5E7.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	18	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+ + ++G g+W++++r g++R++k+c++rw++yl Traes_1AL_25726E5E7.1 18 KGLWSPEEDEKLYSHILRYGVGCWSSVPRLAGLHRCGKSCRLRWLNYL 65 678*******************************************97 PP
2	Myb_DNA-binding	52.3	1.3e-16	71	114	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ Traes_1AL_25726E5E7.1 71 RGTFSQEEEDHIVALHQILGNR-WSQIASHLP-GRTDNEIKNFWNS 114 899*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-23	11	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.627	13	65	IPR017930	Myb domain
SuperFamily	SSF46689	2.81E-29	15	112	IPR009057	Homeodomain-like
SMART	SM00717	3.9E-13	17	67	IPR001005	SANT/Myb domain
Pfam	PF00249	2.4E-14	18	65	IPR001005	SANT/Myb domain
CDD	cd00167	5.11E-11	21	65	No hit	No description
PROSITE profile	PS51294	24.794	66	120	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.4E-26	69	120	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-14	70	118	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-14	71	114	IPR001005	SANT/Myb domain
CDD	cd00167	9.56E-11	73	113	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MGRPTSGGVQ MQQPKLRKGL WSPEEDEKLY SHILRYGVGC WSSVPRLAGL HRCGKSCRLR 60 WLNYLRPDLK RGTFSQEEED HIVALHQILG NRWSQIASHL PGRTDNEIKN FWNSCIKKKL 120 RKQGIDPATH KPMAAGMITA ATAALPDAEA VDRKPLAAAA DGSLAPKQSP EFDPFPVCAD 180 YGGGFAGDLG AANATALYVQ FGDCKDGAHG DTGFGAADYS CVLDVSENLG YGESSSNSSN 240 WNYGREVGSV LDGEVLHWAK AEMERQHDEP PEHKFALPCQ EQSLLANFEF NLEQYF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-29	14	120	3	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM066946	0.0	KM066946.1 Triticum aestivum R2R3-MYB transcription factor (MYB86) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158679.1	0.0	myb-related protein Hv33-like
Swissprot	P20027	1e-155	MYB3_HORVU; Myb-related protein Hv33
TrEMBL	A0A3B5Y5P9	0.0	A0A3B5Y5P9_WHEAT; Uncharacterized protein
STRING	Traes_1AL_25726E5E7.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2327	33	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26660.1	1e-68	myb domain protein 86

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]