PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp_un1082_001
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family G2-like
Protein Properties Length: 485aa    MW: 52839.1 Da    PI: 9.3202
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp_un1082_001genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like64.61.8e-2092144154
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                    k ++ W   L + F++a++++ G +kA+Pk+ile+m+v+ Lt+e+v+SHLQkYR
  Tp_un1082_001  92 KSKISWVDSLQDLFLQAIQHI-GLDKAVPKKILEFMNVPYLTRENVASHLQKYR 144
                    57999****************.******************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-2190149IPR009057Homeodomain-like
SuperFamilySSF466891.34E-1590149IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2492145IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
VLTYKRNGKS IAWTEQNHKD TDVPQEIQLL PEQANVLKTK EKTKFSSRSD TRSVNSSHGT  60
CVSTDGSRKN RKRKSNDGSS VGAESMSQPT KKSKISWVDS LQDLFLQAIQ HIGLDKAVPK  120
KILEFMNVPY LTRENVASHL QKYRKFLKKV TEQGIVCSSM LPDRGIESTF PLAHIRKPCY  180
NNYTASSSWH DTSLNNRSFY SKPEYCLGQS RLLSNTSEPV SFNQLPDNYI NWSSTYDPHR  240
IGSNLTMPIK SNLNFSTQPF QNEGSRSFFE PTEMANKTGQ TSQFLGFGQH GLSAISGNNF  300
NNNMMGSYGS STSNQPGMSS YGSSTSNQPG MSSYGSSTSN QLGMSSYGSL TSTQPGMSSY  360
GSSTSSQPGL KSYGSSTSSQ PGMSSYGSLT STQPGMSSYG SLTSNQPGLN SYGSFTSTQP  420
GMSSYGSVTH NLGLNSYGSL TAHANATAQP NNEISQPENL SLYNALGNTN ELPCDISNFQ  480
FDHTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-1891151464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp_un1082_001
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024012265.10.0putative two-component response regulator ARR21 isoform X1
RefseqXP_024012266.10.0putative two-component response regulator ARR21 isoform X2
SwissprotQ9LYP51e-146ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A3P6DDP20.0A0A3P6DDP2_BRACM; Uncharacterized protein
STRINGBra028705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-128response regulator 21