PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp_un0339_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | Dof | ||||||||
Protein Properties | Length: 174aa MW: 17960.5 Da PI: 4.8609 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 60 | 4.6e-19 | 1 | 33 | 29 | 61 |
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61 PryfCk+CrryWt+GG+lr+vPvGgg+r++ ++ Tp_un0339_001 1 PRYFCKSCRRYWTQGGTLRDVPVGGGTRRSSSK 33 9***************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.8E-15 | 1 | 32 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 8.0E-11 | 1 | 27 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 17.234 | 1 | 32 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
PRYFCKSCRR YWTQGGTLRD VPVGGGTRRS SSKRNRSFSS NATTATSSSC SSSVITTTHG 60 SEPTNQENVT NEAKGSNVIS GYGSFASLLS GQSDGGGAFL ALGNGSGGSD YGFGFGYGYG 120 LEEMGIGYLG VGSGGDIPVV DGGDTWQFGE VEGKSGDSLI WPGLEISMQS NDVK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY088946 | 1e-41 | AY088946.1 Arabidopsis thaliana clone 103581 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013590549.1 | 2e-74 | PREDICTED: dof zinc finger protein DOF1.6 | ||||
Swissprot | Q9SX97 | 3e-46 | DOF16_ARATH; Dof zinc finger protein DOF1.6 | ||||
TrEMBL | A0A0D3CNY4 | 6e-73 | A0A0D3CNY4_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g010470.1 | 1e-73 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9465 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 3e-38 | Dof family protein |